RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ATF1P18846 271 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 PSMB1P20618 241 aaKnown RBP18.23■□□□□ 0.51
VPS28-208ENST00000527797 THBS2P35442 1172 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 IDH3GP51553 393 aaPredicted RBP18.23■□□□□ 0.51
VPS28-208ENST00000527797 PGAP1Q75T13 922 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 ABCB9Q9NP78 766 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 ABRACLQ9P1F3 81 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 OSGIN2Q9Y236 505 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 ATMQ13315 3056 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 BMP4P12644 408 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 TNFSF8P32971 234 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 MRPL49Q13405 166 aaKnown RBP18.22■□□□□ 0.51
VPS28-208ENST00000527797 ZNF846Q147U1 533 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 HES5Q5TA89 166 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 GLT8D1Q68CQ7 371 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 DNAAF1Q8NEP3 725 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 OR1M1Q8NGA1 313 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 ZFAND2BQ8WV99 257 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 C10orf35Q96D05 121 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 WDR12Q9GZL7 423 aaKnown RBP18.22■□□□□ 0.51
VPS28-208ENST00000527797 ELOVL5Q9NYP7 299 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 BOD1L1Q8NFC6 3051 aa18.22■□□□□ 0.51
VPS28-208ENST00000527797 DHRS7CA6NNS2 312 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 AGFG2O95081 481 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 RAB3AP20336 220 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 SPOCK1Q08629 439 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 MALLQ13021 153 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 LAX1Q8IWV1 398 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 SEMA6DQ8NFY4 1073 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 SPSB4Q96A44 273 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 WDFY2Q96P53 400 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 C1QTNF6Q9BXI9 259 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 CDH20Q9HBT6 801 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 PIGLQ9Y2B2 252 aa18.21■□□□□ 0.51
VPS28-208ENST00000527797 TLN1Q9Y490 2541 aaKnown RBP18.21■□□□□ 0.51
VPS28-208ENST00000527797 IGKV3-15P01624 115 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 CELA3BP08861 270 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 THBS4P35443 961 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 MAP2K3P46734 347 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 ZNF92Q03936 586 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 TIMM23BQ5SRD1 257 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 LIX1LQ8IVB5 337 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 MFSD4AQ8N468 514 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 PAQR4Q8N4S7 273 aaPredicted RBP18.2■□□□□ 0.5
VPS28-208ENST00000527797 NKAIN3Q8N8D7 197 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 STEAP2Q8NFT2 490 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 OR51A2Q8NGJ7 313 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 ZNF671Q8TAW3 534 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 S100PBPQ96BU1 408 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 PLGRKTQ9HBL7 147 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 MOV10Q9HCE1 1003 aaKnown RBP18.2■□□□□ 0.5
VPS28-208ENST00000527797 TMEM138Q9NPI0 162 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 EIF3KQ9UBQ5 218 aaKnown RBP18.2■□□□□ 0.5
VPS28-208ENST00000527797 PRRC2CQ9Y520 2896 aaKnown RBP18.2■□□□□ 0.5
VPS28-208ENST00000527797 BDKRB2P30411 391 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 RIPPLY1Q0D2K3 151 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 SPANXN2Q5MJ10 180 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 ZNF529Q6P280 563 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 CCDC190Q86UF4 302 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 RELL2Q8NC24 303 aaPredicted RBP18.2■□□□□ 0.5
VPS28-208ENST00000527797 OR13C9Q8NGT0 318 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 TRMT10AQ8TBZ6 339 aaKnown RBP18.2■□□□□ 0.5
VPS28-208ENST00000527797 PP6455Q8WZ26 134 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 MRI1Q9BV20 369 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 MIXL1Q9H2W2 232 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 TBCCD1Q9NVR7 557 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 JKAMPQ9P055 326 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 ADAM30Q9UKF2 790 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 SLC25A15Q9Y619 301 aa18.2■□□□□ 0.5
VPS28-208ENST00000527797 hCG_38984A0A1B0GV85 526 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 CCL21O00585 134 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 SULT1B1O43704 296 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 HPGDSO60760 199 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 PAHP00439 452 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 NGFP01138 241 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 ERCC1P07992 297 aaPredicted RBP18.19■□□□□ 0.5
VPS28-208ENST00000527797 SNRPBP14678 240 aaKnown RBP18.19■□□□□ 0.5
VPS28-208ENST00000527797 FAHP16930 419 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 WNT5AP41221 380 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 GSK3AP49840 483 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 FAM3AP98173 230 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 ZNF45Q02386 682 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 FAM27E3Q08E93 113 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 C1QTNF12Q5T7M4 302 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 MYPOPQ86VE0 399 aaPredicted RBP18.19■□□□□ 0.5
VPS28-208ENST00000527797 FAM169BQ8N8A8 192 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 OR5L1Q8NGL2 311 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 FOXRED1Q96CU9 486 aaPredicted RBP18.19■□□□□ 0.5
VPS28-208ENST00000527797 STARD10Q9Y365 291 aa18.19■□□□□ 0.5
VPS28-208ENST00000527797 J3QW42 95 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 CD37P11049 281 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 CFPP27918 469 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 ETV6P41212 452 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 MUCL1Q96DR8 90 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 DIRAS2Q96HU8 199 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 STEAP1Q9UHE8 339 aa18.18■□□□□ 0.5
VPS28-208ENST00000527797 A0A0B4J203 849 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 IGLV1-44P01699 117 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 CALCBP10092 127 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 ACKR3P25106 362 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms