RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 LYZL4Q96KX0 146 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 ALKBH3Q96Q83 286 aaPredicted RBP7.32□□□□□ -1.24
RNF4-220ENST00000513578 MARVELD1Q9BSK0 173 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 WNT5BQ9H1J7 359 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 DIABLOQ9NR28 239 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 CLCF1Q9UBD9 225 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 CSAG2Q9Y5P2 127 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 CACNG2Q9Y698 323 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 PTPN13Q12923 2485 aa7.32□□□□□ -1.24
RNF4-220ENST00000513578 TEP1Q99973 2627 aaKnown RBP7.31□□□□□ -1.24
RNF4-220ENST00000513578 DOCK7Q96N67 2140 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 OR14I1A6ND48 311 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 NAP1L6A6NFF2 107 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 GGT3PA6NGU5 568 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 CENPXA8MT69 81 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 E9PLN8 166 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 F5H5K5 113 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 EEF1E1O43324 174 aaKnown RBP7.31□□□□□ -1.24
RNF4-220ENST00000513578 LANCL1O43813 399 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SSX4O60224 188 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 LMX1BO60663 402 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 KRT33AO76009 404 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 GSTT2BP0CG30 244 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 UBBP0CG47 229 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 B4GALT1P15291 398 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ARSBP15848 533 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 CDK2P24941 298 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SLC6A1P30531 599 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 AGTR1P30556 359 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ARR3P36575 388 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 RAG2P55895 527 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 TAS2R20P59543 309 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 AP3S2P59780 193 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 QRFPP83859 136 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ARF1P84077 181 aaKnown RBP7.31□□□□□ -1.24
RNF4-220ENST00000513578 DGCR2P98153 550 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 GALK2Q01415 458 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SPOCK1Q08629 439 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 KLF9Q13886 244 aaPredicted RBP7.31□□□□□ -1.24
RNF4-220ENST00000513578 GPR176Q14439 515 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SF3B4Q15427 424 aaKnown RBP eCLIP7.31□□□□□ -1.241e-7■□□□□ 8.2
RNF4-220ENST00000513578 GUSBP1Q15486 140 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 PLA1AQ53H76 456 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZBTB37Q5TC79 503 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 AGAP6Q5VW22 663 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZNF57Q68EA5 555 aaPredicted RBP7.31□□□□□ -1.24
RNF4-220ENST00000513578 RAB12Q6IQ22 244 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZNF774Q6NX45 483 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 COLCA1Q6ZS62 124 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.31□□□□□ -1.24
RNF4-220ENST00000513578 TOMM5Q8N4H5 51 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ENKURQ8TC29 256 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 FCAMRQ8WWV6 532 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SPSB4Q96A44 273 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SGK3Q96BR1 496 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZFP3Q96NJ6 502 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 NEDD4LQ96PU5 975 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 C1QTNF5Q9BXJ0 243 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 RNF121Q9H920 327 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 CALHM2Q9HA72 323 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 SCPEP1Q9HB40 452 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ETAA1Q9NY74 926 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZNF224Q9NZL3 707 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 COPZ2Q9P299 210 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 UPB1Q9UBR1 384 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 DKK4Q9UBT3 224 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 GHRLQ9UBU3 117 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 RAB22AQ9UL26 194 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 WASF3Q9UPY6 502 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 MYO7BQ6PIF6 2116 aa7.31□□□□□ -1.24
RNF4-220ENST00000513578 ZNF462Q96JM2 2506 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 FAM240BA0A1B0GVZ2 78 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 ANKRD20A5PA0PJZ0 165 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 DCDC2BA2VCK2 349 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 A6NIN4 97 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 TMEM14DPA8MWL7 114 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 AHRRA9YTQ3 701 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 H3BSH0 61 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 H7C417 338 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 KLK10O43240 276 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 XRCC2O43543 280 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 ORC5O43913 435 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 TGM6O95932 706 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 SLC2A1P11166 492 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 HOXB1P14653 301 aaPredicted RBP7.3□□□□□ -1.24
RNF4-220ENST00000513578 ABOP16442 354 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 ANOS1P23352 680 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 HLA-DMAP28067 261 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 MPGP29372 298 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 ZNF93P35789 620 aaPredicted RBP7.3□□□□□ -1.24
RNF4-220ENST00000513578 HTR5AP47898 357 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 SLC6A9P48067 706 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 PMP22Q01453 160 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 RSPO4Q2I0M5 234 aaPredicted RBP7.3□□□□□ -1.24
RNF4-220ENST00000513578 FBXW9Q5XUX1 488 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 OLFML2AQ68BL7 652 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 PLET1Q6UQ28 207 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 NUFIP2Q7Z417 695 aaKnown RBP7.3□□□□□ -1.24
RNF4-220ENST00000513578 NAA40Q86UY6 237 aa7.3□□□□□ -1.24
RNF4-220ENST00000513578 CCDC36Q8IYA8 594 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms