RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ALG10Q5BKT4 473 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 HCP5Q6MZN7 132 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 LIAT1Q6ZQX7 453 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 NKAIN4Q8IVV8 208 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 FAM216BQ8N7L0 139 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 SDR9C7Q8NEX9 313 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 LRRC8CQ8TDW0 803 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 CDCA4Q9BXL8 241 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 CAPN7Q9Y6W3 813 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 RER1O15258 196 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 ANGPTL7O43827 346 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 PTBP3O95758 552 aaKnown RBP11.75□□□□□ -0.53
CLN3-249ENST00000636685 CCDC159P0C7I6 412 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 IDO1P14902 403 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 CTXN1P60606 82 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 GK2Q14410 553 aaPredicted RBP11.75□□□□□ -0.53
CLN3-249ENST00000636685 AANATQ16613 207 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 WDR38Q5JTN6 314 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 TEX36Q5VZQ5 186 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 NCR3LG1Q68D85 454 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 Q6ZS46 218 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 CCDC121Q6ZUS5 278 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 CROCCP2Q86T23 111 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 C8orf46Q8TAG6 207 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 TMEM255BQ8WV15 326 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 DMRTB1Q96MA1 342 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 MUC13Q9H3R2 512 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 IKZF5Q9H5V7 419 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 TMEM38AQ9H6F2 299 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 ZIM2Q9NZV7 527 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 SLAMF8Q9P0V8 285 aa11.75□□□□□ -0.53
CLN3-249ENST00000636685 PRPF19Q9UMS4 504 aaKnown RBP11.75□□□□□ -0.53
CLN3-249ENST00000636685 PLECQ15149 4684 aaKnown RBP11.74□□□□□ -0.53
CLN3-249ENST00000636685 PCLOQ9Y6V0 5065 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 TRBV23-1A0A0A0MS06 115 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 hCG_1807616A0A1W2PRN6 198 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 TYROBPO43914 113 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 ZFPL1O95159 310 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 GRPP07492 148 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 LYL1P12980 280 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 IKZF1Q13422 519 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 TCTEX1D4Q5JR98 221 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 OR5AU1Q8NGC0 362 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 SPRYD4Q8WW59 207 aaPredicted RBP11.74□□□□□ -0.53
CLN3-249ENST00000636685 LIPHQ8WWY8 451 aa11.74□□□□□ -0.53
CLN3-249ENST00000636685 H1FXQ92522 213 aaKnown RBP11.74□□□□□ -0.53
CLN3-249ENST00000636685 ADAT1Q9BUB4 502 aaKnown RBP11.74□□□□□ -0.53
CLN3-249ENST00000636685 SF3B6Q9Y3B4 125 aaKnown RBP11.74□□□□□ -0.53
CLN3-249ENST00000636685 A6NLC8 198 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 NDUFB3O43676 98 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 LHBP01229 141 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 SELLP14151 372 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 CD247P20963 164 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 CNN3Q15417 329 aaKnown RBP11.73□□□□□ -0.53
CLN3-249ENST00000636685 ARSJQ5FYB0 599 aaPredicted RBP11.73□□□□□ -0.53
CLN3-249ENST00000636685 MEPCEQ7L2J0 689 aaKnown RBP11.73□□□□□ -0.53
CLN3-249ENST00000636685 TMEM219Q86XT9 240 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 LINC00482Q8N8I6 264 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 SLCO4A1Q96BD0 722 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 SEH1LQ96EE3 360 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 GPR61Q9BZJ8 451 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 PRSS22Q9GZN4 317 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 METTL8Q9H825 291 aaKnown RBP11.73□□□□□ -0.53
CLN3-249ENST00000636685 PALMDQ9NP74 551 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 SDR39U1Q9NRG7 319 aaPredicted RBP11.73□□□□□ -0.53
CLN3-249ENST00000636685 ATPIF1Q9UII2 106 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 HIF3AQ9Y2N7 669 aa11.73□□□□□ -0.53
CLN3-249ENST00000636685 TCRBV4S1A1TA0A5B7 111 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 A6NIZ1 184 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 HMGB1P1B2RPK0 211 aaPredicted RBP11.72□□□□□ -0.53
CLN3-249ENST00000636685 M0QX08 132 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 M0R1W7 72 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 ACOT8O14734 319 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 SYNGR1O43759 233 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 VDAC2P45880 294 aaPredicted RBP11.72□□□□□ -0.53
CLN3-249ENST00000636685 GYS2P54840 703 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 RAP1BP61224 184 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 RAP1AP62834 184 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 ECH1Q13011 328 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 PCK2Q16822 640 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 RSPO1Q2MKA7 263 aaPredicted RBP11.72□□□□□ -0.53
CLN3-249ENST00000636685 LRIF1Q5T3J3 769 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 AGBL2Q5U5Z8 902 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 COLCA1Q6ZS62 124 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 SLC36A1Q7Z2H8 476 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 KIRREL3Q8IZU9 778 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 LRRC75AQ8NAA5 344 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 PLPP7Q8NBV4 271 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 TMEM239Q8WW34 195 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 ACOT11Q8WXI4 607 aaPredicted RBP11.72□□□□□ -0.53
CLN3-249ENST00000636685 VAPAQ9P0L0 249 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 AURKCQ9UQB9 309 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 NDUFAF1Q9Y375 327 aa11.72□□□□□ -0.53
CLN3-249ENST00000636685 LSM4Q9Y4Z0 139 aaKnown RBP11.72□□□□□ -0.53
CLN3-249ENST00000636685 RYR1P21817 5038 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 CTLA4P16410 223 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 AMY2BP19961 511 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 RBM34P42696 430 aaKnown RBP11.71□□□□□ -0.53
CLN3-249ENST00000636685 RAB13P51153 203 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 BLCAPP62952 87 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms