RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 NMES1Q9C002 83 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 UBTD1Q9HAC8 227 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 PRDM7Q9NQW5 492 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 BIN3Q9NQY0 253 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 TRABD2BA6NFA1 517 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 C5orf67F2Z3F1 127 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 TCRBP04435 133 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 SPINK14Q6IE38 97 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 SPNS2Q8IVW8 549 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 OR10AD1Q8NGE0 317 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 SIGLEC11Q96RL6 698 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 SLC26A1Q9H2B4 701 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 ZFP64Q9NPA5 681 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 TNFRSF19Q9NS68 423 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 ZNF225Q9UK10 706 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 B9D1Q9UPM9 204 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 CDX4O14627 284 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-219ENST00000620786 CTSVO60911 334 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 NKX2-1P43699 371 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-219ENST00000620786 RFX2P48378 723 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 PSMB3P49720 205 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 FUT6P51993 359 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 UBE2G1P62253 170 aa10.26□□□□□ -0.77
CLIP1-219ENST00000620786 HNRNPFP52597 415 aaKnown RBP10.25□□□□□ -0.77
CLIP1-219ENST00000620786 OSR2Q8N2R0 312 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 C17orf78Q8N4C9 275 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SLC30A7Q8NEW0 376 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 TMEM230Q96A57 120 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 GPR87Q9BY21 358 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 DLL4Q9NR61 685 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 RNF150Q9ULK6 438 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 A4GNTQ9UNA3 340 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 AKAP11Q9UKA4 1901 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 HSPB2A8KAH6 182 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SULT1C4O75897 302 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SNAPINO95295 136 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 OR5G3P0C626 314 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 OPRM1P35372 400 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 HSPB2Q16082 182 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SLC36A1Q7Z2H8 476 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 ZNF251Q9BRH9 671 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 ST3GAL6Q9Y274 331 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 FLVCR1Q9Y5Y0 555 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 KCNE3Q9Y6H6 103 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 BCORQ6W2J9 1755 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 ATF1P18846 271 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 OR10A3P58181 314 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SNTB1Q13884 538 aaKnown RBP10.25□□□□□ -0.77
CLIP1-219ENST00000620786 TAF9Q16594 264 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 HSD17B11Q8NBQ5 300 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 GABARAPL1Q9H0R8 117 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 LYZL6O75951 148 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 PAX6P26367 422 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 LIPAP38571 399 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 CARFQ8N187 725 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 FAM26EQ8N5C1 309 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 OR13C5Q8NGS8 318 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 OR10D3Q8NH80 312 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SLC25A21Q9BQT8 299 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-219ENST00000620786 SLC25A19Q9HC21 320 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 PPIL1Q9Y3C6 166 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 PDE4DIPQ5VU43 2346 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 PATE3B3GLJ2 98 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 TOX3O15405 576 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-219ENST00000620786 DRD3P35462 400 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 PPT1P50897 306 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 FLI1Q01543 452 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-219ENST00000620786 MICBQ29980 383 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 M1APQ8TC57 530 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 RAB1BQ9H0U4 201 aa10.25□□□□□ -0.77
CLIP1-219ENST00000620786 RANGRFQ9HD47 186 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-219ENST00000620786 RPS2P15880 293 aaKnown RBP10.24□□□□□ -0.77
CLIP1-219ENST00000620786 PPP1CAP62136 330 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 PRSS41Q7RTY9 318 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 NRARPQ7Z6K4 114 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 CCL17Q92583 94 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 GALMQ96C23 342 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 CCSO14618 274 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 FAHP16930 419 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 BATFQ16520 125 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 ADGRG3Q86Y34 549 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 PELI1Q96FA3 418 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 GABARAPL3Q9BY60 117 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 TCFL5Q9UL49 500 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 ZNF831Q5JPB2 1677 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 HPNP05981 417 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 TPBGQ13641 420 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 SPANXN5Q5MJ07 72 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 ALKAL2Q6UX46 152 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 CREB3L2Q70SY1 520 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 RND1Q92730 232 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 SEC22CQ9BRL7 303 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 ZAR1LA6NP61 321 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 CD3EP07766 207 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 HOXD12P35452 270 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 GNG10P50151 68 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 CCR9P51686 369 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 DMRTC1Q5HYR2 192 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 SCPEP1Q9HB40 452 aa10.24□□□□□ -0.77
CLIP1-219ENST00000620786 A0A1B0GTQ1 180 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms