RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PCM1Q15154 2024 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SHOXO15266 292 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 CYTIPO60759 359 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 BCAS1O75363 584 aaPredicted RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 IL1AP01583 271 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 UBBP0CG47 229 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 RBP2P50120 134 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 NKX2-5P52952 324 aaPredicted RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 FXYD6P3P58550 94 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 RPS25P62851 125 aaKnown RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 FLI1Q01543 452 aaPredicted RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 SMUG1Q53HV7 270 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 PABPC1L2AQ5JQF8 200 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 DRAM2Q6UX65 266 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 ZNF705AQ6ZN79 300 aaPredicted RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 COMTD1Q86VU5 262 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SKA3Q8IX90 412 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SLC30A7Q8NEW0 376 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 NANPQ8TBE9 248 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 RGCCQ9H4X1 137 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SEMA5BQ9P283 1151 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SDK2Q58EX2 2172 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 A0A1B0GVG6 124 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 GABRA4P48169 554 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 ZNF136P52737 540 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 MVDP53602 400 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SEC61A1P61619 476 aaKnown RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 VAMP2P63027 116 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 TMEM81Q6P7N7 255 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 THSD4Q6ZMP0 1018 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 Q8N402 240 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 NANOGP1Q8N7R0 232 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 OR56B1Q8NGI3 324 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 OTOSQ8NHW6 89 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 AICDAQ9GZX7 198 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 PBOV1Q9GZY1 135 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 A0A1W2PPH5 198 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 EPHA2P29317 976 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 ZNF121P58317 390 aaPredicted RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 FBXW9Q5XUX1 488 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 C8orf82Q6P1X6 216 aaPredicted RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 RFPL4BQ6ZWI9 263 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 GLRX5Q86SX6 157 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 SYNPRQ8TBG9 265 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 H1FXQ92522 213 aaKnown RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 GATA6Q92908 595 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 WNT2BQ93097 391 aa8.76□□□□□ -1.01
LIG3-216ENST00000593099 DCLRE1CQ96SD1 692 aaKnown RBP8.76□□□□□ -1.01
LIG3-216ENST00000593099 PIGBOS1A0A0B4J2F0 54 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 K7EPK0 472 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 CDC42EP2O14613 210 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ACTL6BO94805 426 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 BGLAPP02818 100 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 S100A8P05109 93 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SRP9P49458 86 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 TNFSF10P50591 281 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 BMXP51813 675 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 MRPS10P82664 201 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 CDK5Q00535 292 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 C12orf73Q69YU5 71 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ZNF529Q6P280 563 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ZNF573Q86YE8 665 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 FAM71E2Q8N5Q1 922 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 CD300LFQ8TDQ1 290 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ASB10Q8WXI3 467 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 TMIGD2Q96BF3 282 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 CMSS1Q9BQ75 279 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 CHIAQ9BZP6 476 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SLCO1C1Q9NYB5 712 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 A0A1B0GUH1 482 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ANKRD61A6NGH8 418 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 NRASP01111 189 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 RAF1P04049 648 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 TNFRSF1AP19438 455 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 CPT2P23786 658 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SELENOPP49908 381 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 GZMMP51124 257 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 LUMP51884 338 aaPredicted RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 LTBQ06643 244 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 PPA1Q15181 289 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 KCNJ8Q15842 424 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 FAM214BQ7L5A3 538 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 NUFIP2Q7Z417 695 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 ZNF610Q8N9Z0 462 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 OR6M1Q8NGM8 313 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 EMG1Q92979 244 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 OR8B4Q96RC9 309 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SLC6A7Q99884 636 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SELENOIQ9C0D9 397 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 TMEM100Q9NV29 134 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 OR6C68A6NDL8 312 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 KLF7O75840 302 aaPredicted RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 SCAF4O95104 1147 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 EDN3P14138 238 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 CTLA4P16410 223 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 CDKN2AP42771 156 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 SNTB2Q13425 540 aaKnown RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 DTD1Q8TEA8 209 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 RAB40AQ8WXH6 277 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 OPALINQ96PE5 141 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms