RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 A6NIZ1 184 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 GMDSO60547 372 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 SPAG7O75391 227 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 CCDC159P0C7I6 412 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 MUC1P15941 1255 aaPredicted RBP14.56□□□□□ -0.08
CLK3-227ENST00000570296 AQP1P29972 269 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 RAP1BP61224 184 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 RAP1AP62834 184 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 BLMHQ13867 455 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 SCARB2Q14108 478 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 GK2Q14410 553 aaPredicted RBP14.56□□□□□ -0.08
CLK3-227ENST00000570296 LAPTM4AQ15012 233 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 CCDC92Q53HC0 331 aaPredicted RBP14.56□□□□□ -0.08
CLK3-227ENST00000570296 ALG10Q5BKT4 473 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 WDR38Q5JTN6 314 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 COLCA1Q6ZS62 124 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 FAM216BQ8N7L0 139 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 SMYD1Q8NB12 490 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 GTF2H4Q92759 462 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 ADAT1Q9BUB4 502 aaKnown RBP14.56□□□□□ -0.08
CLK3-227ENST00000570296 HAO1Q9UJM8 370 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 TCF19Q9Y242 345 aa14.56□□□□□ -0.08
CLK3-227ENST00000570296 VGLL3A8MV65 326 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 IDO1P14902 403 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 HOXB9P17482 250 aaPredicted RBP14.55□□□□□ -0.08
CLK3-227ENST00000570296 CA6P23280 308 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 PAX6P26367 422 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 CHATP28329 748 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 ECH1Q13011 328 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 LRRC10Q5BKY1 277 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 RABL3Q5HYI8 236 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 TSPYL5Q86VY4 417 aaPredicted RBP14.55□□□□□ -0.08
CLK3-227ENST00000570296 MRPL41Q8IXM3 137 aaKnown RBP14.55□□□□□ -0.08
CLK3-227ENST00000570296 GOLGA6L1Q8N7Z2 621 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 OR5D13Q8NGL4 314 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 PFN4Q8NHR9 129 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 SPRYD4Q8WW59 207 aaPredicted RBP14.55□□□□□ -0.08
CLK3-227ENST00000570296 RCHY1Q96PM5 261 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 TMEM38AQ9H6F2 299 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 CAPN7Q9Y6W3 813 aa14.55□□□□□ -0.08
CLK3-227ENST00000570296 PLECQ15149 4684 aaKnown RBP14.54□□□□□ -0.08
CLK3-227ENST00000570296 hCG_1807616A0A1W2PRN6 198 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 SDHDO14521 159 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 RBM34P42696 430 aaKnown RBP14.54□□□□□ -0.08
CLK3-227ENST00000570296 GSK3BP49841 420 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 PRSS12P56730 875 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 IKZF1Q13422 519 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 TMEM95Q3KNT9 176 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 ZNF826PQ6ZT77 177 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 RBM45Q8IUH3 476 aaKnown RBP14.54□□□□□ -0.08
CLK3-227ENST00000570296 IFT20Q8IY31 132 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 H1FXQ92522 213 aaKnown RBP14.54□□□□□ -0.08
CLK3-227ENST00000570296 TFAP2CQ92754 450 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 MYDGFQ969H8 173 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 SORT1Q99523 831 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 COQ7Q99807 217 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 C20orf27Q9GZN8 174 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 PITPNC1Q9UKF7 332 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 HIF3AQ9Y2N7 669 aa14.54□□□□□ -0.08
CLK3-227ENST00000570296 A6NDX4 124 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 A6NLC8 198 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 TGM4P49221 684 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 LSM6P62312 80 aaKnown RBP14.53□□□□□ -0.08
CLK3-227ENST00000570296 PCK2Q16822 640 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 DUSP7Q16829 419 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 GPR32P1Q8NGA4 272 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 C12orf43Q96C57 262 aaKnown RBP14.53□□□□□ -0.08
CLK3-227ENST00000570296 ZIM2Q9NZV7 527 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 NDUFAF1Q9Y375 327 aa14.53□□□□□ -0.08
CLK3-227ENST00000570296 FRAS1Q86XX4 4008 aa14.52□□□□□ -0.08
CLK3-227ENST00000570296 NKX6-3A6NJ46 265 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 RER1O15258 196 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 CD247P20963 164 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 PPIBP23284 216 aaKnown RBP14.52□□□□□ -0.09
CLK3-227ENST00000570296 POLR2JP52435 117 aaKnown RBP14.52□□□□□ -0.09
CLK3-227ENST00000570296 ELF3P78545 371 aaPredicted RBP14.52□□□□□ -0.09
CLK3-227ENST00000570296 MALLQ13021 153 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 ZFAND6Q6FIF0 208 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 Q6ZS46 218 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 PGAP1Q75T13 922 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 OR4D11Q8NGI4 311 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 HDHD2Q9H0R4 259 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 WDR55Q9H6Y2 383 aaPredicted RBP14.52□□□□□ -0.09
CLK3-227ENST00000570296 SLC25A37Q9NYZ2 338 aa14.52□□□□□ -0.09
CLK3-227ENST00000570296 A0A1W2PQ09 198 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 ACOT8O14734 319 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 GLCEO94923 617 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 GRPP07492 148 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 SLC1A6P48664 564 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 CTXN1P60606 82 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 MZT1Q08AG7 82 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 ATPAF1Q5TC12 328 aaPredicted RBP14.51□□□□□ -0.09
CLK3-227ENST00000570296 ADAMTSL5Q6ZMM2 481 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 CENPVQ7Z7K6 275 aaPredicted RBP14.51□□□□□ -0.09
CLK3-227ENST00000570296 TMEM219Q86XT9 240 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 OR51D1Q8NGF3 324 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 OR4X2Q8NGF9 303 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 UBLCP1Q8WVY7 318 aaPredicted RBP14.51□□□□□ -0.09
CLK3-227ENST00000570296 SLCO4A1Q96BD0 722 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 RNPEPL1Q9HAU8 725 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms