RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ANKRD61	A6NGH8	418 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	SNRPGP15	A8MWD9	76 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	DVL2	O14641	736 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	GABRA1	P14867	456 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	ALOX5AP	P20292	161 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	GDF1	P27539	372 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	CRABP1	P29762	137 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	RPL35	P42766	123 aa	Known RBP	13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	CAPZA2	P47755	286 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	SELENOP	P49908	381 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	GFRA1	P56159	465 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	TAS2R43	P59537	309 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	AP3S2	P59780	193 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	CLN3	Q13286	438 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	MICB	Q29980	383 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	TMEM225	Q6GV28	225 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	ZNF704	Q6ZNC4	412 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	DPY19L4	Q7Z388	723 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	OR1M1	Q8NGA1	313 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	OR6N2	Q8NGY6	317 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	OR1S1	Q8NH92	325 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	SNX33	Q8WV41	574 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	LRRC46	Q96FV0	321 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	ABHD1	Q96SE0	405 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	ZNF552	Q9H707	407 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	FBXL3	Q9UKT7	428 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	CAMK2A	Q9UQM7	478 aa		13.67	□□□□□ -0.22
DDX39A-209	ENST00000589318	SHISA3	A0PJX4	238 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	OR5H15	A6NDH6	313 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	TNFSF11	O14788	317 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	OGG1	O15527	345 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	IL5	P05113	134 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	THBS2	P35442	1172 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	RFC3	P40938	356 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	SEC61A1	P61619	476 aa	Known RBP	13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	KLF9	Q13886	244 aa	Predicted RBP	13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	UQCC3	Q6UW78	93 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	KCNE4	Q8WWG9	221 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	ADGRG7	Q96K78	797 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	UCN2	Q96RP3	112 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	C1QTNF6	Q9BXI9	259 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	SRXN1	Q9BYN0	137 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	ABRACL	Q9P1F3	81 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	GNG8	Q9UK08	70 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	COA3	Q9Y2R0	106 aa	Predicted RBP	13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	TEX46	H3BTG2	121 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	PSMD9	O00233	223 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	NME2P1	O60361	137 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	EIF1B	O60739	113 aa	Known RBP	13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	ABHD16A	O95870	558 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	SP1	P08047	785 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	PGA4	P0DJD7	388 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	PGA3	P0DJD8	388 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	NME2	P22392	152 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	HAAO	P46952	286 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	CLDN15	P56746	228 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	NHLH1	Q02575	133 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	MFAP5	Q13361	173 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	SFXN4	Q6P4A7	337 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	ARL9	Q6T311	187 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	GSG1L	Q6UXU4	331 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	OTOS	Q8NHW6	89 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	RPS4Y2	Q8TD47	263 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	HAVCR2	Q8TDQ0	301 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	AMELY	Q99218	206 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	MGAT4C	Q9UBM8	478 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	MRM2	Q9UI43	246 aa	Known RBP	13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	KCNG2	Q9UJ96	466 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	RASD1	Q9Y272	281 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	CACNA1C	Q13936	2221 aa		13.66	□□□□□ -0.22
DDX39A-209	ENST00000589318	IGHV3-15	A0A0B4J1V0	119 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	TRABD2B	A6NFA1	517 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	ANXA2P2	A6NMY6	339 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	GJE1	A6NN92	205 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	LGALS8	O00214	317 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	GATC	O43716	136 aa	Known RBP	13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	TRAPPC6A	O75865	159 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	TOX	O94900	526 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	PSMB1	P20618	241 aa	Known RBP	13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	CENPA	P49450	140 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	SRP9	P49458	86 aa	Known RBP	13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	GMFB	P60983	142 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	CSNK2A1	P68400	391 aa	Predicted RBP	13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	SIRPA	P78324	504 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	CDK5R1	Q15078	307 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	MEP1B	Q16820	701 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	TMUB2	Q71RG4	321 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	SLC26A10	Q8NG04	563 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	OR6X1	Q8NH79	312 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	MNT	Q99583	582 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	PDCD10	Q9BUL8	212 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	TTTY12	Q9BZ98	90 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	PLEKHA1	Q9HB21	404 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	PIPOX	Q9P0Z9	390 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	FRY	Q5TBA9	3013 aa		13.65	□□□□□ -0.22
DDX39A-209	ENST00000589318	CD8B2	A6NJW9	211 aa		13.64	□□□□□ -0.23
DDX39A-209	ENST00000589318	TMEM127	O75204	238 aa		13.64	□□□□□ -0.23
DDX39A-209	ENST00000589318	MPZL1	O95297	269 aa		13.64	□□□□□ -0.23
DDX39A-209	ENST00000589318	HLA-DQA2	P01906	255 aa		13.64	□□□□□ -0.23
DDX39A-209	ENST00000589318	HPN	P05981	417 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms