RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 A8MU10 97 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 KLLNB2CW77 178 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF732B4DXR9 585 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TRIM49D1C9J1S8 452 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 KRBOX1C9JBD0 128 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 LRRN3E7EW58 273 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 NPIPA2E9PIF3 369 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 LMO7DNF2Z398 122 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PRAMEF26H0Y7S4 382 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TEX46H3BTG2 121 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 M0QZK8 103 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 M0R3G1 203 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PDCD5O14737 125 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 LRRTM2O43300 516 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CHP2O43745 196 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PLIN3O60664 434 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CA11O75493 328 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RHBDL1O75783 438 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 UGT2B17O75795 530 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 AP2A1O95782 977 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ANGPTL1O95841 491 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CCNE2O96020 404 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 IGF2P01344 180 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 IFNA7P01567 189 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C1QBP02746 253 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FTH1P02794 183 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CRYGCP07315 174 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ANXA5P08758 320 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ANKRD34CP0C6C1 535 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TRAPPC2P0DI81 140 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TRAPPC2BP0DI82 140 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MYL2P10916 166 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF7P17097 686 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 AZU1P20160 251 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PVALBP20472 110 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 NPR2P20594 1047 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BGNP21810 368 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BCKDHBP21953 392 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ME2P23368 584 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RPS3P23396 243 aaKnown RBP eCLIP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 DTYMKP23919 212 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PAX6P26367 422 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 YWHABP31946 246 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SFNP31947 248 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CHRNA3P32297 505 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 POLR2IP36954 125 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CD200P41217 278 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MATKP42679 507 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RBM34P42696 430 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HTR5AP47898 357 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CEBPDP49716 269 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SMSP52788 366 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FGF8P55075 233 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 NME5P56597 212 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RAB2AP61019 212 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MAXP61244 160 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PKIAP61925 76 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 DEFA5Q01523 94 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TWF1Q12792 350 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OVGP1Q12889 678 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TSPAN31Q12999 210 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ECH1Q13011 328 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BIKQ13323 160 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 IL18R1Q13478 541 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RUNX3Q13761 415 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CEACAM7Q14002 265 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 GK2Q14410 553 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 P2RY14Q15391 338 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TAF1AQ15573 450 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CEBPEQ15744 281 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C3AR1Q16581 482 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 DGUOKQ16854 277 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MICBQ29980 383 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HNRNPA1L2Q32P51 320 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C2orf76Q3KRA6 126 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CHRFAM7AQ494W8 412 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SBK1Q52WX2 424 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 NCMAPQ5T1S8 102 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 AVPI1Q5T686 147 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C9orf66Q5T8R8 295 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HES3Q5TGS1 186 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PRAMEF5Q5TYX0 476 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 LRRC38Q5VT99 294 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 KHDRBS2Q5VWX1 349 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PRAMEF6Q5VXH4 476 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ANKRD22Q5VYY1 191 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FBXW9Q5XUX1 488 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 REP15Q6BDI9 236 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HAGHLQ6PII5 290 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 WDR59Q6PJI9 974 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 METAP1DQ6UB28 335 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 REG3GQ6UW15 175 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TEX261Q6UWH6 196 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CES3Q6UWW8 571 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BAIAP2L2Q6UXY1 529 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TMIGD1Q6UXZ0 262 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CYHR1Q6ZMK1 362 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 WDR88Q6ZMY6 472 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RNF165Q6ZSG1 346 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ABHD13Q7L211 337 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms