RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MEIS3P1A6NDR6 274 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 VAMP5O95183 116 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 ABOP16442 354 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 GDF1P27539 372 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 MNDAP41218 407 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 SCAND1P57086 179 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 CARD18P57730 90 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 RAC3P60763 192 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 TAF13Q15543 124 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 DCAF10Q5QP82 559 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 LUZP2Q86TE4 346 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 DTX1Q86Y01 620 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 OR52N4Q8NGI2 321 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 SCMH1Q96GD3 660 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 MS4A3Q96HJ5 214 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 RNF170Q96K19 258 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 CDC6Q99741 560 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 GPR87Q9BY21 358 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 TP63Q9H3D4 680 aaPredicted RBP12.77□□□□□ -0.37
VRK3-217ENST00000599538 NKIRAS2Q9NYR9 191 aa12.77□□□□□ -0.37
VRK3-217ENST00000599538 ZNF318Q5VUA4 2279 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 TRAV18A0A075B6X5 111 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ANKRD20A5PA0PJZ0 165 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 OR5H15A6NDH6 313 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 C21orf140B9A014 251 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 SMLR1H3BR10 107 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 DHHO43323 396 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ATP6V1G1O75348 118 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ALDOBP05062 364 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 CELA3AP09093 270 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 CNR1P21554 472 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 GNALP38405 381 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 DMRTC1Q5HYR2 192 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 C10orf128Q5T292 105 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ATP1A1-AS1Q5TC04 95 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ZNF813Q6ZN06 617 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 DNM1P46Q6ZS02 220 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 BEST4Q8NFU0 473 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 CAPSLQ8WWF8 208 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ZNF845Q96IR2 970 aaPredicted RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 ADGRG7Q96K78 797 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ATG5Q9H1Y0 275 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 GHITMQ9H3K2 345 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ZFP64Q9NPA5 681 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 PARD6AQ9NPB6 346 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ELF5Q9UKW6 265 aaPredicted RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 SLC5A6Q9Y289 635 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 NUBP2Q9Y5Y2 271 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ZNF407Q9C0G0 2248 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ACOT7O00154 380 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 MSR1P21757 451 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ITGA3P26006 1051 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 CX3CR1P49238 355 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 ZNF133P52736 654 aaPredicted RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 RSPO1Q2MKA7 263 aaPredicted RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 LINC00696Q6ZRV3 163 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 FAM57BQ71RH2 274 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 OR13C9Q8NGT0 318 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 OR10D3Q8NH80 312 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 SPACA5Q96QH8 159 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 NELFAQ9H3P2 528 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 CNTD2Q9H8S5 307 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 PLSCR3Q9NRY6 295 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 CDV3Q9UKY7 258 aaKnown RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 PAIP2BQ9ULR5 123 aaKnown RBP12.76□□□□□ -0.37
VRK3-217ENST00000599538 FLVCR1Q9Y5Y0 555 aa12.76□□□□□ -0.37
VRK3-217ENST00000599538 DNAJC13O75165 2243 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 LOC390937A0A1W2PQ73 354 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 ZNF716A6NP11 495 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 GALR2O43603 387 aaPredicted RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 GFRA1P56159 465 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 EIF3IQ13347 325 aaKnown RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 SF3B4Q15427 424 aaKnown RBP eCLIP12.75□□□□□ -0.37
VRK3-217ENST00000599538 FCN2Q15485 313 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 TGIF1Q15583 401 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 TRIP6Q15654 476 aaKnown RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 GFOD2Q3B7J2 385 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 MOGAT2Q3SYC2 334 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 ABHD12BQ7Z5M8 362 aaPredicted RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 OR6M1Q8NGM8 313 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 AKAP1Q92667 903 aaKnown RBP eCLIP12.75□□□□□ -0.37
VRK3-217ENST00000599538 C7orf50Q9BRJ6 194 aaKnown RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 ULBP2Q9BZM5 246 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 ZMAT3Q9HA38 289 aaKnown RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 GPR84Q9NQS5 396 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 RABL2AQ9UBK7 228 aaPredicted RBP12.75□□□□□ -0.37
VRK3-217ENST00000599538 RABL2BQ9UNT1 228 aa12.75□□□□□ -0.37
VRK3-217ENST00000599538 ARPC4-TTLL3A0A0A6YYG9 625 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 C7orf66A4D0T2 115 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 GJE1A6NN92 205 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 LDLRAD4O15165 306 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 RCVRNP35243 200 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 LSM6P62312 80 aaKnown RBP12.74□□□□□ -0.37
VRK3-217ENST00000599538 GSG1Q2KHT4 349 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 C1orf100Q5SVJ3 147 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 ABHD17BQ5VST6 288 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 FOXL2NBQ6ZUU3 175 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 BTN2A1Q7KYR7 527 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 RHOUQ7L0Q8 258 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms