RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PATZ1Q9HBE1 687 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 MED4Q9NPJ6 270 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 ZC4H2Q9NQZ6 224 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 CHRAC1Q9NRG0 131 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 AGPAT4Q9NRZ5 378 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 DDX18Q9NVP1 670 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 SLC39A1Q9NY26 324 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF222Q9UK12 451 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 PLEKHG2Q9H7P9 1386 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 UBN2Q6ZU65 1347 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 IGKV2-28A0A075B6P5 120 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 IGHV3OR16-9A0A0B4J2B5 98 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 GOLGA6L7A0A1B0GV03 622 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 SYCE1LA8MT33 242 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 SLC9A3R1O14745 358 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 BCKDKO14874 412 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 RAD51BO15315 384 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 XRCC2O43543 280 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF324O75467 553 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 YIF1AO95070 293 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 IGKV2D-28P01615 120 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 EIF4EP06730 217 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 CTSLP07711 333 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 GFAPP14136 432 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF32P17041 273 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 PFN2P35080 140 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 CLDN8P56748 225 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 RAB11AP62491 216 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 LOXL1Q08397 574 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 SLAQ13239 276 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 WDR43Q15061 677 aaKnown RBP eCLIP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 RAB11BQ15907 218 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 KLHL40Q2TBA0 621 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 TRMT5Q32P41 509 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 PIP5KL1Q5T9C9 394 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 FBXW9Q5XUX1 488 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 TTC19Q6DKK2 380 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 RWDD4Q6NW29 188 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 DNAJC24Q6P3W2 148 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 UBALD2Q8IYN6 164 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 ZFP41Q8N8Y5 198 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 SNX31Q8N9S9 440 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 INO80EQ8NBZ0 244 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 OR11H7Q8NGC8 314 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 OR10AD1Q8NGE0 317 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 OR56A4Q8NGH8 313 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 OR10G6Q8NH81 332 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 PIFOQ8TCI5 191 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 NRBF2Q96F24 287 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 FOXC2Q99958 501 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 CRLF2Q9HC73 371 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 PXMP2Q9NR77 195 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF355PQ9NSJ1 428 aa2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 PEF1Q9UBV8 284 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 RCL1Q9Y2P8 373 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 YTHDF2Q9Y5A9 579 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-209ENST00000583441 ADAMTS13Q76LX8 1427 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 PALLDQ8WX93 1383 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 IGHV1OR15-9A0A0B4J2B8 117 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 A0A0U1RQV1 116 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 H7C417 338 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 DNASE2O00115 360 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 BPY2O14599 106 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 TRDMT1O14717 391 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 HSBP1O75506 76 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 SLC22A5O76082 557 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 CSNK2A2P19784 350 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 RAB5AP20339 215 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 MYL9P24844 172 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 CD82P27701 267 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 RFC3P40938 356 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 SLC1A2P43004 574 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 KDSRQ06136 332 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 ZNF33AQ06730 810 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 SYCNQ0VAF6 134 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 STK11Q15831 433 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 SMUG1Q53HV7 270 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 C5orf47Q569G3 176 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 H3F3CQ6NXT2 135 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 PRMT9Q6P2P2 845 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 WDR82Q6UXN9 313 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 Q6ZR03 302 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 RIMKLAQ8IXN7 391 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 VKORC1L1Q8N0U8 176 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 RGP1Q92546 391 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 PTX4Q96A99 478 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 RPEQ96AT9 228 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 NARS2Q96I59 477 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 COL21A1Q96P44 957 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 HSD17B10Q99714 261 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 IL22Q9GZX6 179 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 BLZF1Q9H2G9 400 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 ZNF430Q9H8G1 570 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 EDA2RQ9HAV5 297 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 C12orf10Q9HB07 376 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 BEX1Q9HBH7 125 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 MYOZ1Q9NP98 299 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 ACP6Q9NPH0 428 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 MCUBQ9NWR8 336 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 AHSPQ9NZD4 102 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms