RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FAM117AQ9C073 453 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 RGCCQ9H4X1 137 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 FN3KRPQ9HA64 309 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 VSX1Q9NZR4 365 aaPredicted RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 CELSR3Q9NYQ7 3312 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 A0A1W2PPH5 198 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 ZNF878C9JN71 531 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 TGFBR3LH3BV60 316 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 EIF4E2O60573 245 aaKnown RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 HCKP08631 526 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 H2BFMP0C1H6 154 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CTSEP14091 401 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CALCRP30988 508 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 EMP2P54851 167 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 PRSS12P56730 875 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CCINQ13939 588 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 GGTLC2Q14390 218 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 ZNF679Q8IYX0 411 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 ZSCAN4Q8NAM6 433 aaPredicted RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 ASB5Q8WWX0 329 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CMTM3Q96MX0 182 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 MRI1Q9BV20 369 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 NUDT9Q9BW91 350 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 TBL1XR1Q9BZK7 514 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 BCL2L14Q9BZR8 327 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 FOXQ1Q9C009 403 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CNTD2Q9H8S5 307 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 MED29Q9NX70 200 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 COA4Q9NYJ1 87 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 HHLA2Q9UM44 414 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 VDAC3Q9Y277 283 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CHD9Q3L8U1 2897 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 NUP210Q8TEM1 1887 aaPredicted RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 ARPC3O15145 178 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 RNH1P13489 461 aaKnown RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 HLA-DOBP13765 273 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 TSFMP43897 325 aaKnown RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 CTAG1AP78358 180 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 MGAT2Q10469 447 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 CHAF1BQ13112 559 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 IKZF1Q13422 519 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 CEBPEQ15744 281 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 RSPO4Q2I0M5 234 aaPredicted RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 HLA-DQA1Q5Y7H0 255 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 WBP2NLQ6ICG8 309 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 KCTD18Q6PI47 426 aaPredicted RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 Q6ZRG5 221 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 ANGPTL5Q86XS5 388 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 OTOSQ8NHW6 89 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 ST7LQ8TDW4 575 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 PIK3IP1Q96FE7 263 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 NXF5Q9H1B4 397 aaKnown RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 SLC2A4RGQ9NR83 387 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 FBXO7Q9Y3I1 522 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 PUS1Q9Y606 427 aaKnown RBP eCLIP10.17□□□□□ -0.78
LDLR-208ENST00000558518 SHISA8B8ZZ34 492 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 RNASEK-C17orf49H0YIS7 233 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 C1QL1O75973 258 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 IL12BP29460 328 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 NR0B1P51843 470 aaKnown RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 MPPED2Q15777 294 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 ZNF528Q3MIS6 628 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 TMEM184AQ6ZMB5 413 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 RNF166Q96A37 237 aaPredicted RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 IP6K3Q96PC2 410 aa10.17□□□□□ -0.78
LDLR-208ENST00000558518 DIDO1Q9BTC0 2240 aaKnown RBP10.17□□□□□ -0.78
LDLR-208ENST00000558518 TRBV5-5A0A0J9YX44 114 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 MEX3AA1L020 520 aaKnown RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 CRTAPO75718 401 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 SLC35E2P0CK97 266 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 CT45A8P0DMV1 189 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 CT45A9P0DMV2 189 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 NFATC4Q14934 902 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 CT45A2Q5DJT8 189 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 ZNF776Q68DI1 518 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 PTCRAQ6ISU1 281 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 ZNF704Q6ZNC4 412 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 BATF2Q8N1L9 274 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 TMEM229BQ8NBD8 167 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 ZNF587Q96SQ5 575 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 TAF9BQ9HBM6 251 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 C2orf74A8MZ97 194 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 GPR89AB7ZAQ6 455 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 ZNF264O43296 627 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 SYT7O43581 403 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 ZNF354AO60765 605 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 ABHD16AO95870 558 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 CRHP06850 196 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 GPR89BP0CG08 455 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 AMY2BP19961 511 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 C5AR1P21730 350 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 GLRA1P23415 457 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 GPM6BQ13491 265 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 TOMM40LQ969M1 308 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 SLAMF9Q96A28 289 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 OR8B4Q96RC9 309 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 SPACA1Q9HBV2 294 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 THAP10Q9P2Z0 257 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 SLC17A4Q9Y2C5 497 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 PCDHGA1Q9Y5H4 931 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms