RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 TPRA1Q86W33 373 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 GABRG1Q8N1C3 465 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 RPRMLQ8N4K4 120 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF283Q8N7M2 679 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 NAXEQ8NCW5 288 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 C1orf162Q8NEQ5 155 aaPredicted RBP15.5■□□□□ 0.07
CLIP1-215ENST00000541108 OR13C5Q8NGS8 318 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 PBOV1Q9GZY1 135 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 RNF121Q9H920 327 aa15.5■□□□□ 0.07
CLIP1-215ENST00000541108 CCDC59Q9P031 241 aaKnown RBP15.5■□□□□ 0.07
CLIP1-215ENST00000541108 INTS1Q8N201 2190 aaKnown RBP15.49■□□□□ 0.07
CLIP1-215ENST00000541108 CDRT1O95170 752 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 PATE4P0C8F1 98 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 OCM2P0CE71 109 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 COX5BP10606 129 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 SDC2P34741 201 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 SOX6P35712 828 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF121P58317 390 aaPredicted RBP15.49■□□□□ 0.07
CLIP1-215ENST00000541108 LY6DQ14210 128 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 KRTAP27-1Q3LI81 207 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF774Q6NX45 483 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 DRAM2Q6UX65 266 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 LINC00299Q6ZSB3 139 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 PRSS45Q7RTY3 260 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF433Q8N7K0 673 aaPredicted RBP15.49■□□□□ 0.07
CLIP1-215ENST00000541108 ST6GALNAC3Q8NDV1 305 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 NANOS1Q8WY41 292 aaKnown RBP15.49■□□□□ 0.07
CLIP1-215ENST00000541108 PPP1R14AQ96A00 147 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 OR14A2Q96R54 314 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 SLIRPQ9GZT3 109 aaKnown RBP15.49■□□□□ 0.07
CLIP1-215ENST00000541108 WNT5BQ9H1J7 359 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 SLC17A5Q9NRA2 495 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 HHLA2Q9UM44 414 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 A3GALT2U3KPV4 340 aa15.49■□□□□ 0.07
CLIP1-215ENST00000541108 TRAV1-2A0A0B4J238 106 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 F5H5K5 113 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 M0R135 149 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 TTRP02766 147 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 ACHEP22303 614 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 CALRP27797 417 aaKnown RBP15.48■□□□□ 0.07
CLIP1-215ENST00000541108 OPRM1P35372 400 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 RORCP51449 518 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 TPTEP56180 551 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 LSAMPQ13449 338 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 TBRG1Q3YBR2 411 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 PABPC1L2AQ5JQF8 200 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 TMEM53Q6P2H8 277 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 C3P1Q6ZMU1 363 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 RDH10Q8IZV5 341 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF610Q8N9Z0 462 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 SLC25A46Q96AG3 418 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF799Q96GE5 643 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 DERL3Q96Q80 235 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 PPIL3Q9H2H8 161 aaKnown RBP15.48■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF629Q9UEG4 869 aaPredicted RBP15.48■□□□□ 0.07
CLIP1-215ENST00000541108 TINAGQ9UJW2 476 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 DVL2O14641 736 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 CASKO14936 926 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 HLA-HP01893 362 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 MYL9P24844 172 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 RAB1AP62820 205 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 GABRA6Q16445 453 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 PCSK4Q6UW60 755 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 AKR7LQ8NHP1 331 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 SP140LQ9H930 580 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 BRD7Q9NPI1 651 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 B3GNT2Q9NY97 397 aa15.48■□□□□ 0.07
CLIP1-215ENST00000541108 SPTA1P02549 2419 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 CIB4A0PJX0 185 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 E9PLN8 166 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 CLPXO76031 633 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 HTR5AP47898 357 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 PMPCAQ10713 525 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 GSG1Q2KHT4 349 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 ODF4Q2M2E3 257 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 HSD17B12Q53GQ0 312 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 FAM27D1Q5T7N8 215 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 OR52H1Q8NGJ2 320 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 TMEM106AQ96A25 262 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 VKORC1Q9BQB6 163 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 MMP27Q9H306 513 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 TPK1Q9H3S4 243 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 PIGMQ9H3S5 423 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 SLC24A3Q9HC58 644 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 SNTG1Q9NSN8 517 aa15.47■□□□□ 0.07
CLIP1-215ENST00000541108 SHISA3A0PJX4 238 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 MSTNO14793 375 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 CD2P06729 351 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 ANXA2P07355 339 aaKnown RBP15.46■□□□□ 0.07
CLIP1-215ENST00000541108 ACSM4P0C7M7 580 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 CD79AP11912 226 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 SRMP19623 302 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 SLC6A9P48067 706 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 CASP6P55212 293 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 PLP2Q04941 152 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 MXD1Q05195 221 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 ZNF404Q494X3 552 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 HIKESHIQ53FT3 197 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 TMEM211Q6ICI0 200 aa15.46■□□□□ 0.07
CLIP1-215ENST00000541108 C17orf78Q8N4C9 275 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms