RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GPX7Q96SL4 187 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 SOX7Q9BT81 388 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 JAM3Q9BX67 310 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ELOVL3Q9HB03 270 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 POLE4Q9NR33 117 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF275Q9NSD4 429 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 DECR2Q9NUI1 292 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 NDE1Q9NXR1 346 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 NKIRAS2Q9NYR9 191 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 TAGLN3Q9UI15 199 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 NDRG4Q9ULP0 352 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 SIGLEC7Q9Y286 467 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ARL2BPQ9Y2Y0 163 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ADAM18Q9Y3Q7 739 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 V9GYQ6 96 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ATRQ13535 2644 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 CUBNO60494 3623 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 DYSFO75923 2080 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 IGHV1-69-2A0A0G2JMI3 117 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 TRBV4-1A0A0J9YWV2 114 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 PLSCR5A0PG75 271 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 UNC119BA6NIH7 251 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 RNF212BA8MTL3 300 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 B4DSR2 109 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 PPIHO43447 177 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SGCEO43556 437 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 DOK2O60496 412 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC16A7O60669 478 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 PTP4A3O75365 173 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 KHDRBS3O75525 346 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 RP2O75695 350 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 DCTN3O75935 186 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 DIRAS1O95057 198 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 GADD45GO95257 159 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 ABHD16AO95870 558 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 TFP02787 698 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SEMG1P04279 462 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 COX5BP10606 129 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 CTLA4P16410 223 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 GSTM3P21266 225 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 PCMT1P22061 227 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 MPV17P39210 176 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 WNT5AP41221 380 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF81P51508 661 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 RPS6KA3P51812 740 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 DVL1P1P54792 670 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 PPP1CBP62140 327 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SPIBQ01892 262 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SCRN3Q0VDG4 424 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 TMED1Q13445 227 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 AQP6Q13520 282 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SEC23BQ15437 767 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 ZMAT1Q5H9K5 638 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM209AQ5JX71 171 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SPATA46Q5T0L3 261 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC35F1Q5T1Q4 408 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF774Q6NX45 483 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SMARCD3Q6STE5 483 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 C16orf89Q6UX73 402 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 DPY19L2P2Q6ZN68 376 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 IL17RELQ6ZVW7 336 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 RFPL4BQ6ZWI9 263 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 JAZF1Q86VZ6 243 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 GLB1L2Q8IW92 636 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 NPEPL1Q8NDH3 523 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 OR52J3Q8NH60 311 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 CLDND2Q8NHS1 167 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC25A40Q8TBP6 338 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 FANK1Q8TC84 345 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 KLF14Q8TD94 323 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 IPCEF1Q8WWN9 437 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 RASD2Q96D21 266 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 MARS2Q96GW9 593 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 NSMCE2Q96MF7 247 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 CDRT15Q96T59 188 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 OR2J1Q9GZK6 312 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SYT4Q9H2B2 425 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 NARFLQ9H6Q4 476 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 SAP30LQ9HAJ7 183 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 EMC7Q9NPA0 242 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 NRIP3Q9NQ35 241 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 CYSLTR2Q9NS75 346 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 VSX1Q9NZR4 365 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 CD300AQ9UGN4 299 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 IER3IP1Q9Y5U9 82 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 WNK2Q9Y3S1 2297 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 MXRA5Q9NR99 2828 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 COL6A5A8TX70 2615 aa5.78□□□□□ -1.48
CCDC88A-213ENST00000476903 CLDN25C9JDP6 229 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 SOCS2O14508 198 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 ARPC2O15144 300 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 PHF1O43189 567 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 SPRY3O43610 288 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TIMM8AO60220 97 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 CDC14BO60729 498 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TXNDC12O95881 172 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 NGFP01138 241 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 IGHV1-46P01743 117 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 FABP3P05413 133 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 MSMBP08118 114 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms