RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MKL2Q9ULH7 1088 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 CPAMD8Q8IZJ3 1885 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 PCNX3Q9H6A9 2034 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 TMEM269A0A1B0GVZ9 245 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 EFSO43281 561 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 MT-ATP6P00846 226 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 PVALBP20472 110 aaPredicted RBP14.63□□□□□ -0.07
SDC4-201ENST00000372733 WDFY1Q8IWB7 410 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 ARMC10Q8N2F6 343 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 NKAIN3Q8N8D7 197 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 OR52N4Q8NGI2 321 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 ADIPOR1Q96A54 375 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 FGGYQ96C11 551 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 RRNAD1Q96FB5 475 aaKnown RBP14.63□□□□□ -0.07
SDC4-201ENST00000372733 CYYR1Q96J86 154 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 F8W036 122 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 PLPP3O14495 311 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 PMP2P02689 132 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 RAB6AP20340 208 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 PSMB6P28072 239 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 GNALP38405 381 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 RABIFP47224 123 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 BLOC1S1P78537 153 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 C1orf140Q5VVS0 124 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 FAM219AQ8IW50 185 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 MARCH1Q8TCQ1 289 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.63□□□□□ -0.07
SDC4-201ENST00000372733 TBL1XR1Q9BZK7 514 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 CENPMQ9NSP4 180 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 SOHLH2Q9NX45 425 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 ZNF629Q9UEG4 869 aaPredicted RBP14.63□□□□□ -0.07
SDC4-201ENST00000372733 RAB22AQ9UL26 194 aa14.63□□□□□ -0.07
SDC4-201ENST00000372733 ARPC4-TTLL3A0A0A6YYG9 625 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 DXOO77932 396 aaKnown RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 NR0B1P51843 470 aaKnown RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 FZD2Q14332 565 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 H3F3CQ6NXT2 135 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 SLC26A10Q8NG04 563 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 OR4A4PQ8NGN8 299 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 ST7LQ8TDW4 575 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 PTX4Q96A99 478 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 TLNRD1Q9H1K6 362 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 PTGES2Q9H7Z7 377 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 SLCO1B1Q9Y6L6 691 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 TCRBV21S2A2A0A5A6 115 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 SOX1O00570 391 aaPredicted RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 SSX5O60225 188 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 NPIPB7O75200 414 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 DUS4LO95620 317 aaKnown RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 SEMA4FO95754 770 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 TPT1P13693 172 aaKnown RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 PGCP20142 388 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 MPZP25189 248 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 OR1D4P47884 311 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 PNLIPRP2P54317 469 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 RAB11FIP2Q7L804 512 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 BHLHE23Q8NDY6 225 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 OR2I1PQ8NGU4 316 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 STOML3Q8TAV4 291 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 OIT3Q8WWZ8 545 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 ARL11Q969Q4 196 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 TCTN2Q96GX1 697 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 PRR13Q9NZ81 148 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 IGKV1D-43A0A0B4J1Z2 117 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 TEX13DA0A0J9YY54 714 aaPredicted RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 F8VVB4 439 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 F8VWA3 439 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 MTRF1O75570 445 aaKnown RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 DDAH2O95865 285 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 IGKV3-11P04433 115 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 ISG15P05161 165 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 VSIG8P0DPA2 414 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 ZNF823P16415 610 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 EIF1AXP47813 144 aaKnown RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 NPBWR1P48145 328 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 GABRA4P48169 554 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 GFERP55789 205 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 SLC26A5P58743 744 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 ZSCAN4Q8NAM6 433 aaPredicted RBP14.62□□□□□ -0.07
SDC4-201ENST00000372733 FOXQ1Q9C009 403 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 DZANK1Q9NVP4 752 aa14.62□□□□□ -0.07
SDC4-201ENST00000372733 MSGN1A6NI15 193 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 H0YIZ8 118 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 IFNA6P05013 189 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 IGHV4-34P06331 123 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 GALNSP34059 522 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 POLR2HP52434 150 aaKnown RBP14.61□□□□□ -0.07
SDC4-201ENST00000372733 PLCXD2Q0VAA5 305 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 NKAPLQ5M9Q1 402 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 PTCRAQ6ISU1 281 aaPredicted RBP14.61□□□□□ -0.07
SDC4-201ENST00000372733 ZNF704Q6ZNC4 412 aaPredicted RBP14.61□□□□□ -0.07
SDC4-201ENST00000372733 RNF144BQ7Z419 303 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 C9orf40Q8IXQ3 194 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 ZNF721Q8TF20 911 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 ADAT3Q96EY9 351 aaPredicted RBP14.61□□□□□ -0.07
SDC4-201ENST00000372733 RNF126Q9BV68 326 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 ESRP2Q9H6T0 727 aaKnown RBP14.61□□□□□ -0.07
SDC4-201ENST00000372733 TREM1Q9NP99 234 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 CYTL1Q9NRR1 136 aa14.61□□□□□ -0.07
SDC4-201ENST00000372733 TMEM131Q92545 1883 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms