RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 REM1O75628 298 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 CSN2P05814 226 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 ABOP16442 354 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 RBMS1P29558 406 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 RPS10P46783 165 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 LSM6P62312 80 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 FAM189A2Q15884 450 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 EXT1Q16394 746 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 HLA-DQA1Q5Y7H0 255 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 GLDNQ6ZMI3 551 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 OR4C3Q8NH37 302 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 PRRC1Q96M27 445 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NRSN2Q9GZP1 204 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 CACYBPQ9HB71 228 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MMP25Q9NPA2 562 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 KLHL28Q9NXS3 571 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 DLL3Q9NYJ7 618 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 PPP4R1LQ9P1A2 415 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 URGCP-MRPS24S4R325 110 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 PCSK5Q92824 1860 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 UBE2QL1A1L167 161 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 OR2M5A3KFT3 312 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 E9PQ18 207 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 IFNA2P01563 188 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 COTL1Q14019 142 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 KIAA0141Q14154 515 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 HBMQ6B0K9 141 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 PPP1R32Q7Z5V6 425 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ARMC10Q8N2F6 343 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 FAM71CQ8NEG0 241 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 OR10J5Q8NHC4 309 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 STOML3Q8TAV4 291 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 MRPL37Q9BZE1 423 aaKnown RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 GPR61Q9BZJ8 451 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ACKR4Q9NPB9 350 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 MAN2C1Q9NTJ4 1040 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 UQCC1Q9NVA1 299 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ALPK2Q86TB3 2170 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 A0A0B4J2A0 478 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 TRBV11-1A0A0K0K1C0 115 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 MED19A0JLT2 244 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 IFITM10A6NMD0 228 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 AP4M1O00189 453 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 PHYHO14832 338 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 PIPP12273 146 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ATF1P18846 271 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 PTH2RP49190 550 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 NOVA1P51513 510 aaKnown RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 CEBPGP53567 150 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 CDH11P55287 796 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 GABREP78334 506 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 KLF9Q13886 244 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 C4orf17Q53FE4 359 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 OR2A2Q6IF42 318 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 DTX1Q86Y01 620 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ARIH2OSQ8N7S6 290 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 POGLUT1Q8NBL1 392 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 OR5L2Q8NGL0 311 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 OR4A4PQ8NGN8 299 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 SLC7A13Q8TCU3 470 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 THEM6Q8WUY1 208 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 RNF138Q8WVD3 245 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 ALG8Q9BVK2 526 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 SLC25A18Q9H1K4 315 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 FN3KRPQ9HA64 309 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 UBQLN4Q9NRR5 601 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 DNAJB12Q9NXW2 375 aaKnown RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 FLRT3Q9NZU0 649 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 H2AFY2Q9P0M6 372 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-203ENST00000354674 SHPKQ9UHJ6 478 aa9.05□□□□□ -0.96
SYNE1-203ENST00000354674 A0A1W2PPE2 198 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF726A6NNF4 738 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 DLL1O00548 723 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 KRT33AO76009 404 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 ZFAND5O76080 213 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 DXOO77932 396 aaKnown RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 UTS2O95399 124 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 MBPP02686 304 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 IFNGR1P15260 489 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 THBS2P35442 1172 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 RPS15P62841 145 aaKnown RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 DMRTA1Q5VZB9 504 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF770Q6IQ21 691 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 MOB3CQ70IA8 216 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF561Q8N587 486 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 LGALS14Q8TCE9 139 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 CPNE4Q96A23 557 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 ASCL3Q9NQ33 180 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 RYDENQ9NUL5 291 aaKnown RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 SLC13A4Q9UKG4 626 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 A0A1W2PQD3 144 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 SERINC4A6NH21 518 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 C9JQL5 133 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 PPIHO43447 177 aaKnown RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 SFTA3P0C7M3 94 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 FABP4P15090 132 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 FGF9P31371 208 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-203ENST00000354674 RFX3P48380 749 aa9.04□□□□□ -0.96
SYNE1-203ENST00000354674 GIPRP48546 466 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms