RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CACNA1GO43497 2377 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 MGAQ8IWI9 3026 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 A0A096LPE4 126 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 A0A1W2PPZ6 126 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 CNOT4O95628 575 aaKnown RBP18.41■□□□□ 0.54
VPS28-208ENST00000527797 PATE4P0C8F1 98 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 SDC2P34741 201 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 TIMP3P35625 211 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 SOX6P35712 828 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 GALK2Q01415 458 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 FOXF2Q12947 444 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ECH1Q13011 328 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 SLC36A2Q495M3 483 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 BCL2L15Q5TBC7 163 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 VWA1Q6PCB0 445 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ZNF704Q6ZNC4 412 aaPredicted RBP18.41■□□□□ 0.54
VPS28-208ENST00000527797 RDH10Q8IZV5 341 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ZNF283Q8N7M2 679 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 GPR148Q8TDV2 347 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ZFP3Q96NJ6 502 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 OR14A2Q96R54 314 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 OR2H1Q9GZK4 316 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 BRD7Q9NPI1 651 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 PLSCR4Q9NRQ2 329 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 SNTG1Q9NSN8 517 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ZNF879B4DU55 563 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 CASKO14936 926 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 DOK2O60496 412 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ARL6IP5O75915 188 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ITGA5P08648 1049 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 TMIGD3P0DMS9 266 aaPredicted RBP18.41■□□□□ 0.54
VPS28-208ENST00000527797 MYL9P24844 172 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 CALRP27797 417 aaKnown RBP18.41■□□□□ 0.54
VPS28-208ENST00000527797 CX3CR1P49238 355 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 PSG4Q00888 419 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 MXD1Q05195 221 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 RBPJQ06330 500 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 Q499Y3 187 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 ANKRD16Q6P6B7 361 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 OR1K1Q8NGR3 316 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 PBOV1Q9GZY1 135 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 MOB1AQ9H8S9 216 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 RNF121Q9H920 327 aa18.41■□□□□ 0.54
VPS28-208ENST00000527797 PHF3Q92576 2039 aaKnown RBP18.4■□□□□ 0.54
VPS28-208ENST00000527797 TRBV5-5A0A0J9YX44 114 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 TTLL8A6PVC2 850 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 SYNGR3O43761 229 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 TNFSF13O75888 250 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 CLPXO76031 633 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 TOXO94900 526 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 APOC1P02654 83 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 MMP7P09237 267 aaPredicted RBP18.4■□□□□ 0.54
VPS28-208ENST00000527797 UCHL1P09936 223 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 MAPK3P27361 379 aaPredicted RBP18.4■□□□□ 0.54
VPS28-208ENST00000527797 MTNR1BP49286 362 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 RORCP51449 518 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 ZNF774Q6NX45 483 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 Q6ZT83 130 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 OR1F12Q8NHA8 337 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 FGFBP3Q8TAT2 258 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 SPTSSAQ969W0 71 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 SLIRPQ9GZT3 109 aaKnown RBP18.4■□□□□ 0.54
VPS28-208ENST00000527797 PPIL3Q9H2H8 161 aaKnown RBP18.4■□□□□ 0.54
VPS28-208ENST00000527797 TPK1Q9H3S4 243 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 PROCRQ9UNN8 238 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 ZNF835Q9Y2P0 537 aa18.4■□□□□ 0.54
VPS28-208ENST00000527797 SLC19A2O60779 497 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 IL18BPO95998 194 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 CLEC2LP0C7M8 214 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 OCM2P0CE71 109 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 ZNF121P58317 390 aaPredicted RBP18.39■□□□□ 0.53
VPS28-208ENST00000527797 TGFBR3Q03167 851 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 FAM27D1Q5T7N8 215 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 TMEM244Q5VVB8 128 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 C3P1Q6ZMU1 363 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 BTLAQ7Z6A9 289 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 DOLPP1Q86YN1 238 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 ELMOD2Q8IZ81 293 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 RPRMLQ8N4K4 120 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 AKR7LQ8NHP1 331 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 THRSPQ92748 146 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 DACH2Q96NX9 599 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 WNT5BQ9H1J7 359 aa18.39■□□□□ 0.53
VPS28-208ENST00000527797 NUFIP1Q9UHK0 495 aaKnown RBP18.39■□□□□ 0.53
VPS28-208ENST00000527797 ARPC4-TTLL3A0A0A6YYG9 625 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 A0A1W2PPK0 400 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 ACOD1A6NK06 481 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 F5H5K5 113 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 ISG15P05161 165 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 UBCP0CG48 685 aaKnown RBP18.38■□□□□ 0.53
VPS28-208ENST00000527797 EDN3P14138 238 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 ZNF404Q494X3 552 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 DPPA2Q7Z7J5 298 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 TPRA1Q86W33 373 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 BCL2L2Q92843 193 aaPredicted RBP18.38■□□□□ 0.53
VPS28-208ENST00000527797 SLC25A46Q96AG3 418 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 STARD4Q96DR4 205 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 DERL3Q96Q80 235 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 NOX4Q9NPH5 578 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 ZNF224Q9NZL3 707 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms