RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PRR3P79522 188 aaKnown RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 SP4Q02446 784 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 IFT88Q13099 833 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CHRNA6Q15825 494 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 TCEAL5Q5H9L2 206 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CT45A1Q5HYN5 189 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 ARMC12Q5T9G4 340 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 PRAMEF20Q5VT98 475 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 AP1ARQ63HQ0 302 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 ZYG11AQ6WRX3 759 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 GTPBP8Q8N3Z3 284 aaPredicted RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 NPWQ8N729 165 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 COX18Q8N8Q8 333 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CHST4Q8NCG5 386 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 OR6N1Q8NGY5 312 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CT45A3Q8NHU0 189 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 NUBPLQ8TB37 319 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 TCEAL3Q969E4 200 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 HSD17B10Q99714 261 aaKnown RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 SULT4A1Q9BR01 284 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 TIMM29Q9BSF4 260 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 C1orf198Q9H425 327 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 ANKRA2Q9H9E1 313 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CCDC59Q9P031 241 aaKnown RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.08
USP40-209ENST00000452724 TRAV19A0A0A6YYK7 116 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 TRBV11-1A0A0K0K1C0 115 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 NDUFAB1O14561 156 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 LSM1O15116 133 aaKnown RBP2.08□□□□□ -2.08
USP40-209ENST00000452724 SCAMP2O15127 329 aaKnown RBP2.08□□□□□ -2.08
USP40-209ENST00000452724 CHST1O43916 411 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 CDC40O60508 579 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP40-209ENST00000452724 CLDN11O75508 207 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 REM1O75628 298 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 FTH1P02794 183 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 CD74P04233 296 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 ZNF688P0C7X2 276 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 ATF6P18850 670 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 U2AF2P26368 475 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP40-209ENST00000452724 PRRX1P54821 245 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 SYNJ2BPP57105 145 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 CRADDP78560 199 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 SELENBP1Q13228 472 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 MPV17L2Q567V2 206 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 MRPL55Q7Z7F7 128 aaKnown RBP2.08□□□□□ -2.08
USP40-209ENST00000452724 CMC1Q7Z7K0 106 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 OR9A2Q8NGT5 310 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 CAPSLQ8WWF8 208 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 DCPSQ96C86 337 aaKnown RBP2.08□□□□□ -2.08
USP40-209ENST00000452724 ECHDC3Q96DC8 303 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 CCDC77Q9BR77 488 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 SLC38A10Q9HBR0 1119 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 MTCH1Q9NZJ7 389 aa2.08□□□□□ -2.08
USP40-209ENST00000452724 GPR179Q6PRD1 2367 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 TRAV6A0A075B6T7 132 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 TRBV9A0A0B4J1U6 114 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 A0A1B0GW55 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 C5orf63A6NC05 138 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 OR2AG2A6NM03 316 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 A8MUU9 505 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 H7C417 338 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 K7EMT4 169 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 EIF3HO15372 352 aaKnown RBP eCLIP2.07□□□□□ -2.08
USP40-209ENST00000452724 NVLO15381 856 aaKnown RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 RAD51CO43502 376 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 CHST10O43529 356 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 EIF4E2O60573 245 aaKnown RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 SLC22A5O76082 557 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 SEMA3DO95025 777 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 CDRT1O95170 752 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 DUX4L2P0CJ85 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 DUX4L3P0CJ86 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 DUX4L5P0CJ88 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 DUX4L6P0CJ89 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 DUX4L7P0CJ90 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 EIF2S2P20042 333 aaKnown RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 CCNA1P78396 465 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 CDK5Q00535 292 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 TGM3Q08188 693 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 SRSF5Q13243 272 aaKnown RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 PSMD5Q16401 504 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 LRRC66Q68CR7 880 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 UNQ9165/PRO28630Q6UXU0 137 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 NPSR1Q6W5P4 371 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 C11orf72Q8NBR9 251 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 OR11H7Q8NGC8 314 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 OR52E2Q8NGJ4 325 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 C17orf50Q8WW18 174 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 APH1BQ8WW43 257 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 RTN4IP1Q8WWV3 396 aaPredicted RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 SLC25A46Q96AG3 418 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 COL21A1Q96P44 957 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 TBL1YQ9BQ87 522 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 C20orf24Q9BUV8 137 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 ZNF717Q9BY31 904 aaPredicted RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 ANKRD60Q9BZ19 345 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 FGF23Q9GZV9 251 aaPredicted RBP2.07□□□□□ -2.08
USP40-209ENST00000452724 TMEM165Q9HC07 324 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 FBXO6Q9NRD1 293 aaPredicted RBP2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms