RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SRMP19623 302 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 MSR1P21757 451 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 ALKBH1Q13686 389 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 SLC25A35Q3KQZ1 300 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 UBE2NLQ5JXB2 153 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 RIPPLY2Q5TAB7 128 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF845Q96IR2 970 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 NIPAL2Q9H841 368 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 ELOVL3Q9HB03 270 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 GP6Q9HCN6 339 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 SLCO1C1Q9NYB5 712 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 COPZ2Q9P299 210 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 CYB5R1Q9UHQ9 305 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 FOXD3Q9UJU5 478 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF175Q9Y473 711 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 DMXL1Q9Y485 3027 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 MED12Q93074 2177 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 IGKV1D-43A0A0B4J1Z2 117 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 RGS13O14921 159 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 UPK3AO75631 287 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 ATF1P18846 271 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 SLC6A1P30531 599 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 PSMB10P40306 273 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 SELENOPP49908 381 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 CCR9P51686 369 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 SCAND1P57086 179 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 LRFN4Q6PJG9 635 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 KLHL24Q6TFL4 600 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 FOXL2NBQ6ZUU3 175 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 DCXRQ7Z4W1 244 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 WDFY1Q8IWB7 410 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 TCTE3Q8IZS6 198 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 OR5AK2Q8NH90 309 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 C15orf40Q8WUR7 153 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 OR14A2Q96R54 314 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 NELFAQ9H3P2 528 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 POU2F3Q9UKI9 436 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 NOSIPQ9Y314 301 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 N6AMT1Q9Y5N5 214 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 CSAG2Q9Y5P2 127 aa16.09■□□□□ 0.17
CCDC88C-203ENST00000389856 FAM172BPA6NC97 362 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 AIPO00170 330 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 PSMD9O00233 223 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 MAGEB4O15481 346 aaPredicted RBP16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 MRPL33O75394 65 aaKnown RBP16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 MPZL1O95297 269 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 H2BFMP0C1H6 154 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 DCTDP32321 178 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 STK11Q15831 433 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 TATDN3Q17R31 274 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 Q499Y3 187 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 LRRN1Q6UXK5 716 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 OR13C5Q8NGS8 318 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 CPT1CQ8TCG5 803 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 SARAFQ96BY9 339 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 DCBLD2Q96PD2 775 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 DERL3Q96Q80 235 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 BRD7Q9NPI1 651 aa16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 DDX28Q9NUL7 540 aaKnown RBP16.08■□□□□ 0.17
CCDC88C-203ENST00000389856 A0A1B0GVC2 190 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 AQP7O14520 342 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 SULT1B1O43704 296 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 KRT33AO76009 404 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 CRYABP02511 175 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 CALCBP10092 127 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 RPS27P42677 84 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 GPR176Q14439 515 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 RNFT1Q5M7Z0 435 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 RPUSD3Q6P087 351 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 Q6ZS92 163 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 LIX1LQ8IVB5 337 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 OR2G2Q8NGZ5 317 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF671Q8TAW3 534 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 ST7LQ8TDW4 575 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 ABHD3Q8WU67 409 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 RNF133Q8WVZ7 376 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 WDYHV1Q96HA8 205 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 PDCD1LG2Q9BQ51 273 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 RBM24Q9BX46 236 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 NOX4Q9NPH5 578 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 NLKQ9UBE8 527 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 LIPGQ9Y5X9 500 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 CACNG2Q9Y698 323 aa16.08■□□□□ 0.16
CCDC88C-203ENST00000389856 ALPK2Q86TB3 2170 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 TRBV5-5A0A0J9YX44 114 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 PRR32B1ATL7 298 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 INMT-MINDY4F8WBC2 141 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 ITGB2P05107 769 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 YES1P07947 543 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 TMPRSS3P57727 454 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 MRPS10P82664 201 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 MRPS34P82930 218 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 PMP22Q01453 160 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 DYRK1AQ13627 763 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 SF3B4Q15427 424 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 TAF13Q15543 124 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 SGCAQ16586 387 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 PLA1AQ53H76 456 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 LINC00346Q8IVM7 164 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF676Q8N7Q3 588 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms