RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CRNNQ9UBG3 495 aaPredicted RBP9.27□□□□□ -0.93
SS18-217ENST00000580958 EMC9Q9Y3B6 208 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 PEX16Q9Y5Y5 336 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ASPMQ8IZT6 3477 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 INTS1Q8N201 2190 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 TRBV5-5A0A0J9YX44 114 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 A0A1B0GVC2 190 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 IQCMA0A1B0GVH7 501 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 SLC22A20A6NK97 555 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 CLDN25C9JDP6 229 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 ZNF878C9JN71 531 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 LOC110117498-PIK3R3F6TDL0 507 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 MKRN2OSH3BPM6 223 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 J3QRK9 145 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 K7ENP7 123 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 CTDSP2O14595 271 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 RER1O15258 196 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 PIN1P1O15428 100 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 RRP8O43159 456 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 DOK2O60496 412 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 MRPL33O75394 65 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 ARL6IP5O75915 188 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 TGM6O95932 706 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 S100A5P33763 92 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 SOX2P48431 317 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 MRPS34P82930 218 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 DCTN2Q13561 401 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 TAF13Q15543 124 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 ZNF829Q3KNS6 432 aaPredicted RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 Q499Y3 187 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 HSD17B12Q53GQ0 312 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 TSPO2Q5TGU0 170 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 INO80CQ6PI98 192 aaPredicted RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 NUFIP2Q7Z417 695 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 P4HA3Q7Z4N8 544 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 RDH10Q8IZV5 341 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 LRRC18Q8N456 261 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 IL17RDQ8NFM7 739 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 ORAI1Q96D31 301 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 DERL3Q96Q80 235 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 USB1Q9BQ65 265 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 LINC00470Q9BZP3 86 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 WDR12Q9GZL7 423 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 PRDM14Q9GZV8 571 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 SLC25A18Q9H1K4 315 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 BCO1Q9HAY6 547 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 CRLF2Q9HC73 371 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 HMG20AQ9NP66 347 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 NOX4Q9NPH5 578 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 PNRC2Q9NPJ4 139 aaKnown RBP9.26□□□□□ -0.93
SS18-217ENST00000580958 TMEM38BQ9NVV0 291 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 PARPBPQ9NWS1 579 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 DKK4Q9UBT3 224 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 OR52A1Q9UKL2 312 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 ZNF175Q9Y473 711 aa9.26□□□□□ -0.93
SS18-217ENST00000580958 ZGRF1Q86YA3 2104 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 TRAV1-2A0A0B4J238 106 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 A0A0G2JK05 382 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 TMEM269A0A1B0GVZ9 245 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 KRT33AO76009 404 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 IGHV3-9P01782 118 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 YES1P07947 543 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 B4GALT1P15291 398 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 NPR2P20594 1047 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 HSD11B1P28845 292 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 PRKXP51817 358 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 OR10A3P58181 314 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 HIST1H3AP68431 136 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 PLEKHN1Q494U1 663 aaPredicted RBP9.25□□□□□ -0.93
SS18-217ENST00000580958 CCDC92Q53HC0 331 aaPredicted RBP9.25□□□□□ -0.93
SS18-217ENST00000580958 RIPPLY2Q5TAB7 128 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 BCL2L15Q5TBC7 163 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 HIST2H3PS2Q5TEC6 136 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 FAM27BQ5VT28 67 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 HIST2H3AQ71DI3 136 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 SYT9Q86SS6 491 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 TPRA1Q86W33 373 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 NR2C2APQ86WQ0 139 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 GJC3Q8NFK1 279 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 GPR148Q8TDV2 347 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 TSEN15Q8WW01 171 aaKnown RBP9.25□□□□□ -0.93
SS18-217ENST00000580958 PHYHIPQ92561 330 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 EXTL1Q92935 676 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 BORCS5Q969J3 196 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 SARAFQ96BY9 339 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 FBXO17Q96EF6 278 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 CEP19Q96LK0 163 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 ATF6BQ99941 703 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 SH3GL3Q99963 347 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 BRD7Q9NPI1 651 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 SLC7A10Q9NS82 523 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 FAM206AQ9NX38 181 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 LUZP4Q9P127 313 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 CLCF1Q9UBD9 225 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 IGF2RP11717 2491 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 MYO7BQ6PIF6 2116 aa9.25□□□□□ -0.93
SS18-217ENST00000580958 DCHS1Q96JQ0 3298 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 TRBV5-7A0A0A0MS05 114 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 TAF4O00268 1085 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 P2RY10O00398 339 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms