RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PPIAL4GP0DN37 164 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SLC2A2P11168 524 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 ETFAP13804 333 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SELEP16581 610 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 UGT2B7P16662 529 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 EGR1P18146 543 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 GABRB1P18505 474 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 FUT1P19526 365 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CXCL3P19876 107 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CD22P20273 847 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CPT2P23786 658 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 HRH2P25021 359 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CXCR1P25024 350 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 DPP4P27487 766 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 DUSP1P28562 367 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RFX5P48382 616 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 MRPL19P49406 292 aaKnown RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 TTPAP49638 278 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 STK19P49842 368 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 PPOXP50336 477 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 METAP2P50579 478 aaKnown RBP eCLIP2.9□□□□□ -1.95
VPS35-208ENST00000568612 TNFSF10P50591 281 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RAB9AP51151 201 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PNLIPRP2P54317 469 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 F2RL1P55085 397 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ST8SIA6P61647 398 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PPIAP62937 165 aaKnown RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 FABP5Q01469 135 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 KEAP1Q14145 624 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 HMGN3Q15651 99 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TMEM241Q24JQ0 296 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 HYAL4Q2M3T9 481 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PLPPR5Q32ZL2 321 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 MORN2Q502X0 79 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 C5orf47Q569G3 176 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PYDC2Q56P42 97 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 LDLRAD2Q5SZI1 272 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 WBP2NLQ6ICG8 309 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR2A2Q6IF42 318 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR4A47Q6IF82 309 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 EIF5AL1Q6IS14 154 aaKnown RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 CAPN13Q6MZZ7 669 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 AADACL2Q6P093 401 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 C19orf48Q6RUI8 117 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 DHRS13Q6UX07 377 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 LINGO4Q6UY18 593 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 IL34Q6ZMJ4 242 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 GDPGP1Q6ZNW5 385 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CDHR3Q6ZTQ4 885 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 GOLGA7Q7Z5G4 137 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SLC35E3Q7Z769 313 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PARGQ86W56 976 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 NRROSQ86YC3 692 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 UEVLDQ8IX04 471 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 KDM8Q8N371 416 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 BPIFB2Q8N4F0 458 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 JAGN1Q8N5M9 183 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RNF148Q8N7C7 305 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ZNF614Q8N883 585 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PI4KAP1Q8N8J0 262 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 NRACQ8N912 160 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 COLGALT1Q8NBJ5 622 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TMEM185AQ8NFB2 350 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR4S1Q8NGB4 309 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR52E1Q8NGJ3 308 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR4D5Q8NGN0 318 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR1K1Q8NGR3 316 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR2T35Q8NGX2 323 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ARRDC2Q8TBH0 407 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 FAM110BQ8TC76 370 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 STT3BQ8TCJ2 826 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 GPX8Q8TED1 209 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RNF133Q8WVZ7 376 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RAB40AQ8WXH6 277 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ROPN1LQ96C74 230 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 DTD2Q96FN9 168 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SFRP2Q96HF1 295 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ITCHQ96J02 903 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 HARBI1Q96MB7 349 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ZNF583Q96ND8 569 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 FCRL5Q96RD9 977 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PCDHB18PQ96TA0 734 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SYT11Q9BT88 431 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TM2D2Q9BX73 214 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RAB11FIP5Q9BXF6 653 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 FTHL17Q9BXU8 183 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 FGFBP2Q9BYJ0 223 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR2J1Q9GZK6 312 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR8D2Q9GZM6 311 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 IL22Q9GZX6 179 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CST9LQ9H4G1 147 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CDCP1Q9H5V8 836 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CLMPQ9H6B4 373 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PLEKHA2Q9HB19 425 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 EML4Q9HC35 981 aaKnown RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 UBQLN4Q9NRR5 601 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 THSD1Q9NS62 852 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ASF1BQ9NVP2 202 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PLEKHJ1Q9NW61 149 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TMEM160Q9NX00 188 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms