RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MRPL13Q9BYD1 178 aaKnown RBP9.85□□□□□ -0.83
CUX1-212ENST00000547394 SRXN1Q9BYN0 137 aa9.85□□□□□ -0.83
CUX1-212ENST00000547394 POTEKPQ9BYX7 375 aa9.85□□□□□ -0.83
CUX1-212ENST00000547394 DEPPQ9NTK1 212 aa9.85□□□□□ -0.83
CUX1-212ENST00000547394 GDF2Q9UK05 429 aaPredicted RBP9.85□□□□□ -0.83
CUX1-212ENST00000547394 R4GMQ9 66 aa9.85□□□□□ -0.83
CUX1-212ENST00000547394 NBEAQ8NFP9 2946 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 NCKAP5O14513 1909 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 A0A0J9YW62 118 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 A0A1W2PQ72 361 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 CENPXA8MT69 81 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 E9PLN8 166 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 CDX4O14627 284 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 IGHG1P01857 330 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 MSX1P28360 303 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 LAP3P28838 519 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 SELENOPP49908 381 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 KLF9Q13886 244 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 MFSD13AQ14CX5 517 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ATP1A1-AS1Q5TC04 95 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 C6orf15Q6UXA7 325 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 TMPPEQ6ZT21 453 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ZNF227Q86WZ6 799 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 BEST3Q8N1M1 668 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 NOXO1Q8NFA2 376 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 FAM3DQ96BQ1 224 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 CMBLQ96DG6 245 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 P4HTMQ9NXG6 502 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 STEAP1Q9UHE8 339 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 FREM1Q5H8C1 2179 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 SVILO95425 2214 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 MYO7BQ6PIF6 2116 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ZNF726A6NNF4 738 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 PHYHO14832 338 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 AKR7A2O43488 359 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 IGHV3-9P01782 118 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ACSM4P0C7M7 580 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 PATE4P0C8F1 98 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ABOP16442 354 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ACP1P24666 158 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 PTBP1P26599 531 aaKnown RBP eCLIP9.84□□□□□ -0.834e-11■■■■■ 42.8
CUX1-212ENST00000547394 MLF1P58340 268 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 CHAF1BQ13112 559 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 TRA2AQ13595 282 aaKnown RBP eCLIP9.84□□□□□ -0.83
CUX1-212ENST00000547394 EXT1Q16394 746 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 WIPI1Q5MNZ9 446 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 C5orf46Q6UWT4 87 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ZNF627Q7L945 461 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 BPHLQ86WA6 291 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 DTX1Q86Y01 620 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 OR6N1Q8NGY5 312 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 NPRL2Q8WTW4 380 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ROBO4Q8WZ75 1007 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ADAT3Q96EY9 351 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 FAM71F1Q96KD3 344 aaPredicted RBP9.84□□□□□ -0.83
CUX1-212ENST00000547394 ATG5Q9H1Y0 275 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 PLA2G3Q9NZ20 509 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 KLHL9Q9P2J3 617 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 CYB5R1Q9UHQ9 305 aa9.84□□□□□ -0.83
CUX1-212ENST00000547394 ZNF292O60281 2723 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 CEP250Q9BV73 2442 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 IGLV3-32A0A0A0MS00 114 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 SRSF10O75494 262 aaKnown RBP9.83□□□□□ -0.84
CUX1-212ENST00000547394 CD59P13987 128 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 NTF4P34130 210 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 VEGFCP49767 419 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 TAF13Q15543 124 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 MOGAT2Q3SYC2 334 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 TIGD3Q6B0B8 471 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 DNM1P34Q6PK57 102 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 OR13C9Q8NGT0 318 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 OR14L1PQ8NHC6 308 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 MIB2Q96AX9 1013 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 ZC3HAV1LQ96H79 300 aaKnown RBP9.83□□□□□ -0.84
CUX1-212ENST00000547394 RBM24Q9BX46 236 aaKnown RBP9.83□□□□□ -0.84
CUX1-212ENST00000547394 DPAGT1Q9H3H5 408 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 HRASLSQ9HDD0 168 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 ZNF222Q9UK12 451 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 AKAP13Q12802 2813 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 ARID1AO14497 2285 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 TMEM272A0A1B0GTI8 110 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 SMAD9O15198 467 aaKnown RBP9.83□□□□□ -0.84
CUX1-212ENST00000547394 TTRP02766 147 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 HPXP02790 462 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 ALDOBP05062 364 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 PITPNAQ00169 270 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 RAB11BQ15907 218 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 SLC25A53Q5H9E4 307 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 LINC00696Q6ZRV3 163 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 OR4D6Q8NGJ1 314 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 PAQR8Q8TEZ7 354 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 GIMAP1Q8WWP7 306 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 HAVCR1Q96D42 359 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 AKAP7Q9P0M2 348 aaPredicted RBP9.83□□□□□ -0.84
CUX1-212ENST00000547394 IL17BQ9UHF5 180 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 CDV3Q9UKY7 258 aaKnown RBP9.83□□□□□ -0.84
CUX1-212ENST00000547394 HHLA2Q9UM44 414 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 SLC5A6Q9Y289 635 aa9.83□□□□□ -0.84
CUX1-212ENST00000547394 F5H5K5 113 aa9.82□□□□□ -0.84
CUX1-212ENST00000547394 ETV2O00321 342 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms