RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 COMMD1Q8N668 190 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 FAM86B1Q8N7N1 296 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CYB561D1Q8N8Q1 229 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 OR5W2Q8NH69 310 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 OR5K2Q8NHB8 316 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 LRRC29Q8WV35 223 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 EXOSC8Q96B26 276 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SCRT1Q9BWW7 348 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SLC17A9Q9BYT1 436 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ZYG11BQ9C0D3 744 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SLC7A5P2Q9GIP4 190 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 VCXQ9H320 206 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ISYNA1Q9NPH2 558 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 LHX9Q9NQ69 397 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 MRPL22Q9NWU5 206 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 AHSPQ9NZD4 102 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CLN8Q9UBY8 286 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CARMIL3Q8ND23 1372 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 DENND4AQ7Z401 1863 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ASTN1O14525 1302 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 KCNE1BA0A087WTH5 132 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 IGHV3-74A0A0B4J1X5 117 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 IGHV5-51A0A0C4DH38 117 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 IGHV3-66A0A0C4DH42 116 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 K7EMT4 169 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 L7N2F9 121 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 AKR7A2O43488 359 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 FGFR1OPO95684 399 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 HLA-DPB1P04440 258 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 RETP07949 1114 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CLTAP09496 248 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 UBCP0CG48 685 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 STAG3L3P0CL85 134 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CTRB1P17538 263 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PGAM1P18669 254 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 MAGP20916 626 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 VSX2P58304 361 aaPredicted RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ERCC8Q13216 396 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PON2Q15165 354 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PTGES3Q15185 160 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 THEM4Q5T1C6 240 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF691Q5VV52 312 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 FBXW12Q6X9E4 464 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 MRPL55Q7Z7F7 128 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 MICU2Q8IYU8 434 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PGAM4Q8N0Y7 254 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 OR10AD1Q8NGE0 317 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 OR52E5Q8NH55 327 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 APH1BQ8WW43 257 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PEX13Q92968 403 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 TM4SF18Q96CE8 201 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 OR2A5Q96R48 311 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 IQCGQ9H095 443 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 TMEM38AQ9H6F2 299 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 EDA2RQ9HAV5 297 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CRLF2Q9HC73 371 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 LYRM4Q9HD34 91 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ACP6Q9NPH0 428 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 FAM49BQ9NUQ9 324 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 OR12D3Q9UGF7 316 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF222Q9UK12 451 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 KCNE3Q9Y6H6 103 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 A0A1B0GVX0 72 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 A0A1W2PP18 115 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 NCBP2LA6PVI3 153 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 H0YIV9 168 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 M0R3G1 203 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 RAD51CO43502 376 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 FCN3O75636 299 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 IFNW1P05000 195 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CT45A6P0DMU7 189 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CT45A5P0DMU8 189 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CT45A7P0DMV0 189 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CSNK2A2P19784 350 aaPredicted RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 WARSP23381 471 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 U2AF2P26368 475 aaKnown RBP eCLIP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CDH17Q12864 832 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 SLAQ13239 276 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF266Q14584 549 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 SNRNP35Q16560 246 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PGGHGQ32M88 737 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CT45A1Q5HYN5 189 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 SPESP1Q6UW49 350 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 TMCO2Q7Z6W1 182 aaPredicted RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PRSS58Q8IYP2 241 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 METTL13Q8N6R0 699 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 NOXO1Q8NFA2 376 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 OR56A4Q8NGH8 313 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 OR52E2Q8NGJ4 325 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 CT45A3Q8NHU0 189 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 TMEM230Q96A57 120 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF681Q96N22 645 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF317Q96PQ6 595 aaPredicted RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 SPNS1Q9H2V7 528 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 NCOR1P1Q9H4R4 102 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 NTN4Q9HB63 628 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 MRPS30Q9NP92 439 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 ZDHHC4Q9NPG8 344 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PXMP2Q9NR77 195 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms