RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 PPP1R32Q7Z5V6 425 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 OR1J4Q8NGS1 313 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 ZFP3Q96NJ6 502 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 COL25A1Q9BXS0 654 aaPredicted RBP11.71□□□□□ -0.53
COL18A1-201ENST00000342220 SERINC1Q9NRX5 453 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 PFDN2Q9UHV9 154 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 TLN1Q9Y490 2541 aaKnown RBP11.71□□□□□ -0.53
COL18A1-201ENST00000342220 IGLV3-12A0A075B6K2 115 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 DNASE1P24855 282 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 SSTP61278 116 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 C5orf46Q6UWT4 87 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 C2CD4CQ8TF44 421 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 PDCD1LG2Q9BQ51 273 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 LRFN3Q9BTN0 628 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 ALG12Q9BV10 488 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 ACTR6Q9GZN1 396 aa11.71□□□□□ -0.53
COL18A1-201ENST00000342220 OR6C76A6NM76 312 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 A8MVM7 634 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 TO15178 435 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 DHFRP00374 187 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 RENP00797 406 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 CD14P08571 375 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 RNF224P0DH78 156 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 RAB3BP20337 219 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 STOMP27105 288 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 DGCR2P98153 550 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 LGALS3BPQ08380 585 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 WIPI1Q5MNZ9 446 aaPredicted RBP11.71□□□□□ -0.54
COL18A1-201ENST00000342220 FAM69AQ5T7M9 428 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 PYHIN1Q6K0P9 492 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 PXKQ7Z7A4 578 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 COMMD2Q86X83 199 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 CLEC1AQ8NC01 280 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 WDR76Q9H967 626 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 NIT2Q9NQR4 276 aa11.71□□□□□ -0.54
COL18A1-201ENST00000342220 STMND1H3BQB6 276 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 CXCL3P19876 107 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SLC2A5P22732 501 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 EDNRAP25101 427 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 GIFP27352 417 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 OVCH2Q7RTZ1 564 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 TPRA1Q86W33 373 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 TRAV36DV7A0A075B6V5 113 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SC5DO75845 299 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 ATF1P18846 271 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 CYB561P49447 251 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 CCR6P51684 374 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 BIDP55957 195 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 TCF15Q12870 199 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 MYBPHQ13203 477 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 CDCP2Q5VXM1 449 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 TMEM205Q6UW68 189 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 NLRC3Q7RTR2 1065 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SIAH3Q8IW03 269 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 LOXL4Q96JB6 756 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SFXN2Q96NB2 322 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 DPAGT1Q9H3H5 408 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 INPP5EQ9NRR6 644 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SLCO1C1Q9NYB5 712 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 EIF4E2O60573 245 aaKnown RBP11.7□□□□□ -0.54
COL18A1-201ENST00000342220 RAMP1O60894 148 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 TCRBP04435 133 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 LPLP06858 475 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SPI1P17947 270 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 RAB13P51153 203 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 CAPZA1P52907 286 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 PRPS1P60891 318 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 EXT1Q16394 746 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 C3AR1Q16581 482 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 DMKNQ6E0U4 476 aaPredicted RBP11.7□□□□□ -0.54
COL18A1-201ENST00000342220 IZUMO1Q8IYV9 350 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 FTMTQ8N4E7 242 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 TOMM5Q8N4H5 51 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 ZNF565Q8N9K5 539 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 NUBPLQ8TB37 319 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 WBP1Q96G27 269 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 SCMH1Q96GD3 660 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 BIN3Q9NQY0 253 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 LAMP5Q9UJQ1 280 aa11.7□□□□□ -0.54
COL18A1-201ENST00000342220 RD3LP0DJH9 198 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 Q0VFX4 171 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 IKZF1Q13422 519 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 PRSS45Q7RTY3 260 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 POMGNT2Q8NAT1 580 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 BEST4Q8NFU0 473 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 MS4A3Q96HJ5 214 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 ST6GALNAC2Q9UJ37 374 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 A0A087WV48 116 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 C7orf66A4D0T2 115 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 S100A9P06702 114 aaKnown RBP11.69□□□□□ -0.54
COL18A1-201ENST00000342220 GALNSP34059 522 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 TAS2R43P59537 309 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 TRAM1Q15629 374 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 EXOSC6Q5RKV6 272 aaKnown RBP11.69□□□□□ -0.54
COL18A1-201ENST00000342220 RPL13AP3Q6NVV1 102 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 LRRN1Q6UXK5 716 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 GALNTL5Q7Z4T8 443 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 PRSS33Q8NF86 280 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 LRRC46Q96FV0 321 aa11.69□□□□□ -0.54
COL18A1-201ENST00000342220 TSPAN32Q96QS1 320 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms