RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 DVL2O14641 736 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 RER1O15258 196 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 CST2P09228 141 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 UCHL1P09936 223 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 CEACAM16Q2WEN9 425 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 KRTCAP3Q53RY4 240 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 WDR38Q5JTN6 314 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 OR13C5Q8NGS8 318 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 RGP1Q92546 391 aaPredicted RBP12.41□□□□□ -0.42
SS18-201ENST00000269137 GPR137Q96N19 417 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 FOXB1Q99853 325 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 BARHL1Q9BZE3 327 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 COMMD4Q9H0A8 199 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 DDX28Q9NUL7 540 aaKnown RBP12.41□□□□□ -0.42
SS18-201ENST00000269137 FBXL3Q9UKT7 428 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 TLN1Q9Y490 2541 aaKnown RBP12.41□□□□□ -0.42
SS18-201ENST00000269137 A0A075B6Q4 140 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 TRBV5-5A0A0J9YX44 114 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 SHISA3A0PJX4 238 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 CASKO14936 926 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 SS18L1O75177 396 aaPredicted RBP12.41□□□□□ -0.42
SS18-201ENST00000269137 ARL6IP5O75915 188 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 KRT33AO76009 404 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 CLEC2LP0C7M8 214 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 CTSSP25774 331 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 AGTR1P30556 359 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 BMXP51813 675 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 NUFIP2Q7Z417 695 aaKnown RBP12.41□□□□□ -0.42
SS18-201ENST00000269137 P4HA3Q7Z4N8 544 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 ZNF676Q8N7Q3 588 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 OR6Q1Q8NGQ2 317 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 WNT2BQ93097 391 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 WACQ9BTA9 647 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 G6PC2Q9NQR9 355 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 TUBD1Q9UJT1 453 aa12.41□□□□□ -0.42
SS18-201ENST00000269137 TRAV1-2A0A0B4J238 106 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 TMEM269A0A1B0GVZ9 245 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ZNF879B4DU55 563 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ZNF587BE7ETH6 402 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 LOC110117498-PIK3R3F6TDL0 507 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 TAF4O00268 1085 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 GRB2P62993 217 aaKnown RBP12.4□□□□□ -0.42
SS18-201ENST00000269137 CXADRP78310 365 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 MXD1Q05195 221 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 MFGE8Q08431 387 aaPredicted RBP12.4□□□□□ -0.42
SS18-201ENST00000269137 SF3B4Q15427 424 aaKnown RBP eCLIP12.4□□□□□ -0.424e-8■■■□□ 18.5
SS18-201ENST00000269137 Q499Y3 187 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ZNF324BQ6AW86 544 aaPredicted RBP12.4□□□□□ -0.42
SS18-201ENST00000269137 KLHL24Q6TFL4 600 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ZNF627Q7L945 461 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.4□□□□□ -0.42
SS18-201ENST00000269137 FGD2Q7Z6J4 655 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 SYT9Q86SS6 491 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 TPRA1Q86W33 373 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ZNF100Q8IYN0 542 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 SLC22A24Q8N4F4 322 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 THRSPQ92748 146 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 FAM122AQ96E09 287 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 OR14A2Q96R54 314 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 TPK1Q9H3S4 243 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 EMC9Q9Y3B6 208 aa12.4□□□□□ -0.42
SS18-201ENST00000269137 ATMQ13315 3056 aa12.4□□□□□ -0.43
SS18-201ENST00000269137 MYL9P24844 172 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 MAPK3P27361 379 aaPredicted RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 GUSBP1Q15486 140 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 TAF13Q15543 124 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 ACSF3Q4G176 576 aaPredicted RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 FAM27D1Q5T7N8 215 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 FAM180AQ6UWF9 173 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 LRRC18Q8N456 261 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 OR5M9Q8NGP3 310 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 GPR148Q8TDV2 347 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 FBXO17Q96EF6 278 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 TRIB1Q96RU8 372 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 FAM206AQ9NX38 181 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 OR52A1Q9UKL2 312 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 SLC22A13Q9Y226 551 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 RTTNQ86VV8 2226 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 IQCMA0A1B0GVH7 501 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 IGHV3-9P01782 118 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 ISG15P05161 165 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 B4GALT1P15291 398 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 OR3A2P47893 321 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 PSMA6P60900 246 aaKnown RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 PCBD1P61457 104 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 HNRNPA0Q13151 305 aaKnown RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 CCDC92Q53HC0 331 aaPredicted RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 ZNF813Q6ZN06 617 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 ZNF704Q6ZNC4 412 aaPredicted RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 Q8NA96 180 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 DOCK7Q96N67 2140 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 DERL3Q96Q80 235 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 MOB1AQ9H8S9 216 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 UPB1Q9UBR1 384 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 MALT1Q9UDY8 824 aa12.39□□□□□ -0.43
SS18-201ENST00000269137 PLEKHB1Q9UF11 243 aaPredicted RBP12.39□□□□□ -0.43
SS18-201ENST00000269137 ARHGAP21Q5T5U3 1957 aa12.38□□□□□ -0.43
SS18-201ENST00000269137 TRBV5-7A0A0A0MS05 114 aa12.38□□□□□ -0.43
SS18-201ENST00000269137 ACOD1A6NK06 481 aa12.38□□□□□ -0.43
SS18-201ENST00000269137 C1QTNF9BB2RNN3 333 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms