RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SEC16AO15027 2179 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 LOC107986453A0A1B0GWG9 222 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 UBCP0CG48 685 aaKnown RBP19.01■□□□□ 0.63
VPS28-205ENST00000526204 HSF1Q00613 529 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 TLE3Q04726 772 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 MPPED2Q15777 294 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 HDDC2Q7Z4H3 204 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 OR2AK2Q8NG84 335 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 SEH1LQ96EE3 360 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 POTEKPQ9BYX7 375 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 APMAPQ9HDC9 416 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 OPN4Q9UHM6 478 aa19.01■□□□□ 0.63
VPS28-205ENST00000526204 MRPS18BQ9Y676 258 aaKnown RBP19.01■□□□□ 0.63
VPS28-205ENST00000526204 TMEM269A0A1B0GVZ9 245 aa19■□□□□ 0.63
VPS28-205ENST00000526204 HMSDA8MTL9 139 aa19■□□□□ 0.63
VPS28-205ENST00000526204 MCRIP1C9JLW8 97 aa19■□□□□ 0.63
VPS28-205ENST00000526204 PDGFAP04085 211 aa19■□□□□ 0.63
VPS28-205ENST00000526204 HEXBP07686 556 aa19■□□□□ 0.63
VPS28-205ENST00000526204 NAGAP17050 411 aa19■□□□□ 0.63
VPS28-205ENST00000526204 CXCL2P19875 107 aa19■□□□□ 0.63
VPS28-205ENST00000526204 C16orf47Q6ZP98 133 aaPredicted RBP19■□□□□ 0.63
VPS28-205ENST00000526204 HIST2H2ABQ8IUE6 130 aaPredicted RBP19■□□□□ 0.63
VPS28-205ENST00000526204 CCDC107Q8WV48 283 aa19■□□□□ 0.63
VPS28-205ENST00000526204 RELTQ969Z4 430 aa19■□□□□ 0.63
VPS28-205ENST00000526204 SFXN2Q96NB2 322 aa19■□□□□ 0.63
VPS28-205ENST00000526204 FOXQ1Q9C009 403 aa19■□□□□ 0.63
VPS28-205ENST00000526204 EXO5Q9H790 373 aa19■□□□□ 0.63
VPS28-205ENST00000526204 TRIOO75962 3097 aa19■□□□□ 0.63
VPS28-205ENST00000526204 CPAMD8Q8IZJ3 1885 aa19■□□□□ 0.63
VPS28-205ENST00000526204 LOC390937A0A1W2PQ73 354 aa19■□□□□ 0.63
VPS28-205ENST00000526204 OR6C65A6NJZ3 312 aa19■□□□□ 0.63
VPS28-205ENST00000526204 VSTM2BA6NLU5 285 aa19■□□□□ 0.63
VPS28-205ENST00000526204 GIMD1P0DJR0 217 aa19■□□□□ 0.63
VPS28-205ENST00000526204 MMP16P51512 607 aa19■□□□□ 0.63
VPS28-205ENST00000526204 ARPC4P59998 168 aa19■□□□□ 0.63
VPS28-205ENST00000526204 POU3F1Q03052 451 aaPredicted RBP19■□□□□ 0.63
VPS28-205ENST00000526204 C1orf100Q5SVJ3 147 aa19■□□□□ 0.63
VPS28-205ENST00000526204 ZNF627Q7L945 461 aa19■□□□□ 0.63
VPS28-205ENST00000526204 COMMD7Q86VX2 200 aa19■□□□□ 0.63
VPS28-205ENST00000526204 OR8S1Q8NH09 359 aa19■□□□□ 0.63
VPS28-205ENST00000526204 SLC25A21Q9BQT8 299 aaPredicted RBP19■□□□□ 0.63
VPS28-205ENST00000526204 CDCP1Q9H5V8 836 aa19■□□□□ 0.63
VPS28-205ENST00000526204 B3GALT5Q9Y2C3 310 aa19■□□□□ 0.63
VPS28-205ENST00000526204 DCDC2BA2VCK2 349 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 C2orf72A6NCS6 295 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 MEIS3P1A6NDR6 274 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 LDLRAD4O15165 306 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 H2BFMP0C1H6 154 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 MYF5P13349 255 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 SEC61A1P61619 476 aaKnown RBP18.99■□□□□ 0.63
VPS28-205ENST00000526204 FMODQ06828 376 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 TMEM205Q6UW68 189 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 NHLRC1Q6VVB1 395 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 C3P1Q6ZMU1 363 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 MUC20Q8N307 709 aaPredicted RBP18.99■□□□□ 0.63
VPS28-205ENST00000526204 JAGN1Q8N5M9 183 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 TNFAIP8L1Q8WVP5 186 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 FANCFQ9NPI8 374 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 CGGBP1Q9UFW8 167 aaPredicted RBP18.99■□□□□ 0.63
VPS28-205ENST00000526204 ALPK2Q86TB3 2170 aa18.99■□□□□ 0.63
VPS28-205ENST00000526204 A0A0C4DFX4 3053 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 F5H5P2 479 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 ETV2O00321 342 aaPredicted RBP18.98■□□□□ 0.63
VPS28-205ENST00000526204 RAB3DO95716 219 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 ITGB2P05107 769 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 ACY1Q03154 408 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 TMEM71Q6P5X7 295 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 OR5M1Q8NGP8 315 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 RNF133Q8WVZ7 376 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 C5orf34Q96MH7 638 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 NPAS1Q99742 590 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 CMKLR1Q99788 373 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 C1orf198Q9H425 327 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 MED11Q9P086 117 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 KIF25Q9UIL4 384 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 A0A1W2PPL8 197 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 ALOX12BO75342 701 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 RRASP10301 218 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 BCKDHBP21953 392 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 MSX1P28360 303 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 H2BFSP57053 126 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 GPR85P60893 370 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 SPOCK1Q08629 439 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 NKAIN1Q4KMZ8 207 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 WDR45BQ5MNZ6 344 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 ARSKQ6UWY0 536 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 LINC00346Q8IVM7 164 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 SPEM1Q8N4L4 309 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 OR51A2Q8NGJ7 313 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 OR5L2Q8NGL0 311 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 THAP3Q8WTV1 239 aaPredicted RBP18.98■□□□□ 0.63
VPS28-205ENST00000526204 DVL3Q92997 716 aaPredicted RBP18.98■□□□□ 0.63
VPS28-205ENST00000526204 TMEM138Q9NPI0 162 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 ALKBH4Q9NXW9 302 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 VDAC3Q9Y277 283 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 RP1P56715 2156 aa18.98■□□□□ 0.63
VPS28-205ENST00000526204 TEX51A0A1B0GUA7 166 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 LIPT2A6NK58 231 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 DOK2O60496 412 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 ZNF354AO60765 605 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms