RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 RAB25P57735 213 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 MRPS10P82664 201 aaKnown RBP17.58■□□□□ 0.4
CLIP3-206ENST00000593074 TMEM69Q5SWH9 247 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 ASPHD2Q6ICH7 369 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 DEGS2Q6QHC5 323 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 SERPINA12Q8IW75 414 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 CAPSLQ8WWF8 208 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 AKAP1Q92667 903 aaKnown RBP eCLIP17.58■□□□□ 0.4
CLIP3-206ENST00000593074 PPP1R14AQ96A00 147 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 ZPBPQ9BS86 351 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 WDFY3Q8IZQ1 3526 aa17.58■□□□□ 0.4
CLIP3-206ENST00000593074 CACNA1CQ13936 2221 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 C7orf66A4D0T2 115 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 CDK2P24941 298 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 RPS15P62841 145 aaKnown RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 FOXK1P85037 733 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 ZNF239Q16600 458 aaKnown RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 PRAMEF20Q5VT98 475 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 NOXA1Q86UR1 476 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 GLB1L2Q8IW92 636 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 UEVLDQ8IX04 471 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 OR5M1Q8NGP8 315 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 ASB5Q8WWX0 329 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 ZBTB8AQ96BR9 441 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 SCMH1Q96GD3 660 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 TP63Q9H3D4 680 aaPredicted RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 MCUBQ9NWR8 336 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 DHDHQ9UQ10 334 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 CFAP54Q96N23 3096 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 A0A1W2PQ72 361 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 CD59P13987 128 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 FSTP19883 344 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 TCEA1P23193 301 aaKnown RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 FKBP2P26885 142 aaKnown RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 GIFP27352 417 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 MTFR2Q6P444 385 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 C6orf15Q6UXA7 325 aaPredicted RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 RAB11FIP2Q7L804 512 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 LINC00346Q8IVM7 164 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 OR52I2Q8NH67 350 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 RNF133Q8WVZ7 376 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 GCDHQ92947 438 aaPredicted RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 NTNG2Q96CW9 530 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 OR5B2Q96R09 309 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 EMC6Q9BV81 110 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 CACNG6Q9BXT2 260 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 CDCP1Q9H5V8 836 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 ZNF160Q9HCG1 818 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 G6PC2Q9NQR9 355 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 ZNF275Q9NSD4 429 aaPredicted RBP17.57■□□□□ 0.4
CLIP3-206ENST00000593074 ITGB1BP2Q9UKP3 347 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 FBXL3Q9UKT7 428 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 EMC9Q9Y3B6 208 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 HDGFL3Q9Y3E1 203 aa17.57■□□□□ 0.4
CLIP3-206ENST00000593074 A0A1W2PNR3 127 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 RGS13O14921 159 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 TRAF3IP2O43734 574 aaPredicted RBP17.56■□□□□ 0.4
CLIP3-206ENST00000593074 DHFRP00374 187 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 SNTB2Q13425 540 aaKnown RBP17.56■□□□□ 0.4
CLIP3-206ENST00000593074 BCL2L15Q5TBC7 163 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 NOXO1Q8NFA2 376 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 C15orf40Q8WUR7 153 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 TAAR9Q96RI9 348 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 R4GN57 208 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 A0A087WZY1 265 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 A0A0A6YYJ9 748 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 RAD1O60671 282 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 KRT33AO76009 404 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 ECDO95905 644 aaPredicted RBP17.56■□□□□ 0.4
CLIP3-206ENST00000593074 MT-ND4P03905 459 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 ISG15P05161 165 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 YES1P07947 543 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 PGA4P0DJD7 388 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 PGA3P0DJD8 388 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 RAG2P55895 527 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 GPR85P60893 370 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 MRPS15P82914 257 aaKnown RBP17.56■□□□□ 0.4
CLIP3-206ENST00000593074 THEM4Q5T1C6 240 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 TMEM225Q6GV28 225 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 UTS2BQ765I0 119 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 PLCZ1Q86YW0 608 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 FCAMRQ8WWV6 532 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 RBP7Q96R05 134 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 SH2D2AQ9NP31 389 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 ING3Q9NXR8 418 aa17.56■□□□□ 0.4
CLIP3-206ENST00000593074 TRAV6A0A075B6T7 132 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 SLC17A2O00624 439 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 CDX4O14627 284 aaPredicted RBP17.55■□□□□ 0.4
CLIP3-206ENST00000593074 OPN1LWP04000 364 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 CD2P06729 351 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 ITGA5P08648 1049 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 IGFBP3P17936 291 aaPredicted RBP17.55■□□□□ 0.4
CLIP3-206ENST00000593074 TCN2P20062 427 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 SSR4P51571 173 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 TAS2R20P59543 309 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 FAM166AQ6J272 317 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 DNM1P46Q6ZS02 220 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 HDDC2Q7Z4H3 204 aa17.55■□□□□ 0.4
CLIP3-206ENST00000593074 RPS19BP1Q86WX3 136 aaKnown RBP17.55■□□□□ 0.4
CLIP3-206ENST00000593074 LIX1LQ8IVB5 337 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms