RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ALKBH1Q13686 389 aaKnown RBP9.31□□□□□ -0.92
SS18-217ENST00000580958 HSPB2Q16082 182 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 MOGQ16653 247 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 KCTD18Q6PI47 426 aaPredicted RBP9.31□□□□□ -0.92
SS18-217ENST00000580958 CORO6Q6QEF8 472 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 PLXDC2Q6UX71 529 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 AAED1Q7RTV5 226 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 DCXRQ7Z4W1 244 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 CEACAM19Q7Z692 300 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 KRT77Q7Z794 578 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 EGFL6Q8IUX8 553 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 SPACA3Q8IXA5 215 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 ZNF679Q8IYX0 411 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 MS4A15Q8N5U1 240 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 OR6Q1Q8NGQ2 317 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 ST7LQ8TDW4 575 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 ABHD3Q8WU67 409 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 INTS12Q96CB8 462 aaKnown RBP9.31□□□□□ -0.92
SS18-217ENST00000580958 WDYHV1Q96HA8 205 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 DACH2Q96NX9 599 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 POLE4Q9NR33 117 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 FOXD3Q9UJU5 478 aaPredicted RBP9.31□□□□□ -0.92
SS18-217ENST00000580958 MCTS1Q9ULC4 181 aaKnown RBP9.31□□□□□ -0.92
SS18-217ENST00000580958 CAMK2AQ9UQM7 478 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 RCE1Q9Y256 329 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 POLR1DQ9Y2S0 133 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 CEP295Q9C0D2 2601 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 A0A087WV48 116 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 SHISA3A0PJX4 238 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 DHHO43323 396 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 GPRIN2O60269 458 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 TMCC2O75069 709 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 SERPINA3P01011 423 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 INHBBP09529 407 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 SOX6P35712 828 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 EIF2S3P41091 472 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 KIR3DL2P43630 455 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 RIDAP52758 137 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 RPS11P62280 158 aaKnown RBP eCLIP9.3□□□□□ -0.92
SS18-217ENST00000580958 ROM1Q03395 351 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 HNRNPA0Q13151 305 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 ZNF169Q14929 603 aaPredicted RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 KCNMB1Q16558 191 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 SGCAQ16586 387 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 ACSM3Q53FZ2 586 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 FAM27D1Q5T7N8 215 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 OR7E24Q6IFN5 339 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 IGFL3Q6UXB1 125 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 FOXL2NBQ6ZUU3 175 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 PRSS35Q8N3Z0 413 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 OR2G2Q8NGZ5 317 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 HAVCR2Q8TDQ0 301 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 RNF128Q8TEB7 428 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 RGP1Q92546 391 aaPredicted RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 TMEM45BQ96B21 275 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 MAP6Q96JE9 813 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 C4orf45Q96LM5 186 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 PDCD1LG2Q9BQ51 273 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 MED18Q9BUE0 208 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 RBM24Q9BX46 236 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 MROQ9BYG7 248 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 PRRG4Q9BZD6 226 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 BARHL1Q9BZE3 327 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 ULBP2Q9BZM5 246 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 C6orf62Q9GZU0 229 aaPredicted RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 PPIL3Q9H2H8 161 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 KCNN2Q9H2S1 579 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 MMP27Q9H306 513 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 TPK1Q9H3S4 243 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 SIAEQ9HAT2 523 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 PAQR5Q9NXK6 330 aaPredicted RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 CYB5R1Q9UHQ9 305 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 GDF2Q9UK05 429 aaPredicted RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 ZNF281Q9Y2X9 895 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 LRP12Q9Y561 859 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 PCDHGA9Q9Y5G4 932 aaKnown RBP9.3□□□□□ -0.92
SS18-217ENST00000580958 LHFPL6Q9Y693 200 aa9.3□□□□□ -0.92
SS18-217ENST00000580958 RTTNQ86VV8 2226 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 IGKV3D-15A0A087WSY6 115 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 OR4C45A6NMZ5 311 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 CASKO14936 926 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 SC5DO75845 299 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 NCR1O76036 304 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 IGHG3P01860 377 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 PDGFAP04085 211 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 H2BFMP0C1H6 154 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 CALRP27797 417 aaKnown RBP9.29□□□□□ -0.92
SS18-217ENST00000580958 RORCP51449 518 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 ZNF84P51523 738 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 CAV3P56539 151 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 ROR2Q01974 943 aaKnown RBP9.29□□□□□ -0.92
SS18-217ENST00000580958 MFGE8Q08431 387 aaPredicted RBP9.29□□□□□ -0.92
SS18-217ENST00000580958 ZMAT1Q5H9K5 638 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 WDR38Q5JTN6 314 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 FDX2Q6P4F2 183 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 PAMR1Q6UXH9 720 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 UNQ9370/PRO34162Q6UXP9 181 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 CHMP1BQ7LBR1 199 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 GPR137CQ8N3F9 429 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms