RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SULT1B1O43704 296 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 HRGP04196 525 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 ITGA5P08648 1049 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 KLK2P20151 261 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 MRPS15P82914 257 aaKnown RBP18.09■□□□□ 0.49
CLN3-230ENST00000568076 SNTA1Q13424 505 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 TIGD3Q6B0B8 471 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 TMEM105Q8N8V8 129 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 M1APQ8TC57 530 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 C11orf40Q8WZ69 217 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 SCMH1Q96GD3 660 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 DHDHQ9UQ10 334 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 RCE1Q9Y256 329 aa18.09■□□□□ 0.49
CLN3-230ENST00000568076 C7orf66A4D0T2 115 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 TRAF3IP2O43734 574 aaPredicted RBP18.08■□□□□ 0.49
CLN3-230ENST00000568076 RAMP1O60894 148 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 SFTPDP35247 375 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 MNDAP41218 407 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 TAS2R20P59543 309 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 TMEM255AQ5JRV8 349 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 TMEM225Q6GV28 225 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 UEVLDQ8IX04 471 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 OR11G2Q8NGC1 345 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 OR51D1Q8NGF3 324 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 NKX3-1Q99801 234 aaPredicted RBP18.08■□□□□ 0.49
CLN3-230ENST00000568076 GHITMQ9H3K2 345 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 PTGES2Q9H7Z7 377 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 PROK2Q9HC23 129 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 PLSCR3Q9NRY6 295 aa18.08■□□□□ 0.49
CLN3-230ENST00000568076 EML6Q6ZMW3 1958 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 LOC101059948A0A1B0GTJ6 334 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 A0A1W2PQ72 361 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 KRT33AO76009 404 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 CCL3P10147 92 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 EFNB2P52799 333 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 TMEM176BQ3YBM2 270 aaPredicted RBP18.08■□□□□ 0.48
CLN3-230ENST00000568076 SLC22A10Q63ZE4 541 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 LRFN4Q6PJG9 635 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 BIVMQ86UB2 503 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 GPAT4Q86UL3 456 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 PLCZ1Q86YW0 608 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 RNF133Q8WVZ7 376 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 KCNK15Q9H427 330 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 OR52A1Q9UKL2 312 aa18.08■□□□□ 0.48
CLN3-230ENST00000568076 KIF26BQ2KJY2 2108 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 ARPC4-TTLL3A0A0A6YYG9 625 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 FAM47E-STBD1D6RA91 191 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 RGS13O14921 159 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 GMDSO60547 372 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 LDOC1O95751 146 aaPredicted RBP18.07■□□□□ 0.48
CLN3-230ENST00000568076 DHFRP00374 187 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 YES1P07947 543 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 PGA4P0DJD7 388 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 PGA3P0DJD8 388 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 IGFBP3P17936 291 aaPredicted RBP18.07■□□□□ 0.48
CLN3-230ENST00000568076 ADH6P28332 368 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 SCAND1P57086 179 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 CAMK2DQ13557 499 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 FAM166AQ6J272 317 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 OPN5Q6U736 354 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 PLPP7Q8NBV4 271 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 NECAB3Q96P71 396 aaPredicted RBP18.07■□□□□ 0.48
CLN3-230ENST00000568076 RBP7Q96R05 134 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 CDCP1Q9H5V8 836 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 HRASLSQ9HDD0 168 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 PAQR5Q9NXK6 330 aaPredicted RBP18.07■□□□□ 0.48
CLN3-230ENST00000568076 TAS2R4Q9NYW5 299 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 COPZ2Q9P299 210 aa18.07■□□□□ 0.48
CLN3-230ENST00000568076 COL27A1Q8IZC6 1860 aaPredicted RBP18.07■□□□□ 0.48
CLN3-230ENST00000568076 EIF1AYO14602 144 aaKnown RBP18.06■□□□□ 0.48
CLN3-230ENST00000568076 GLSO94925 669 aaPredicted RBP18.06■□□□□ 0.48
CLN3-230ENST00000568076 EIF1P41567 113 aaKnown RBP18.06■□□□□ 0.48
CLN3-230ENST00000568076 TMEM81Q6P7N7 255 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 OR10S1Q8NGN2 331 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 SLC25A43Q8WUT9 341 aaPredicted RBP18.06■□□□□ 0.48
CLN3-230ENST00000568076 FCAMRQ8WWV6 532 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 ZNF160Q9HCG1 818 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 CENPMQ9NSP4 180 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 CYB5R1Q9UHQ9 305 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 TMEM269A0A1B0GVZ9 245 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 LOC107986453A0A1B0GWG9 222 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 TTLL8A6PVC2 850 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 GP1BAP07359 652 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 GSTT2P0CG29 244 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 GSTT2BP0CG30 244 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 ACP1P24666 158 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 POU3F4P49335 361 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 MFAP5Q13361 173 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 CDK10Q15131 360 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 BCL2A1Q16548 175 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 THEM4Q5T1C6 240 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 DEGS2Q6QHC5 323 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 BTN2A1Q7KYR7 527 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 NOXO1Q8NFA2 376 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 ZBTB8AQ96BR9 441 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 NTNG2Q96CW9 530 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 SLC25A44Q96H78 314 aaPredicted RBP18.06■□□□□ 0.48
CLN3-230ENST00000568076 ANGPTL4Q9BY76 406 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 SH2D2AQ9NP31 389 aa18.06■□□□□ 0.48
CLN3-230ENST00000568076 ING3Q9NXR8 418 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms