RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 IFNEQ86WN2 208 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FUNDC1Q8IVP5 155 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 NAXDQ8IW45 347 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 IFT20Q8IY31 132 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 GABRG1Q8N1C3 465 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 LRRC18Q8N456 261 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 MREGQ8N565 214 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 NECAP1Q8NC96 275 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FBXO36Q8NEA4 188 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 BEST4Q8NFU0 473 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 OR9A2Q8NGT5 310 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 RFESDQ8TAC1 157 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 ACOT11Q8WXI4 607 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 EXOSC8Q96B26 276 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 NTNG2Q96CW9 530 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 MOCOSQ96EN8 888 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 WBP1Q96G27 269 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 WFIKKN1Q96NZ8 548 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 COPS8Q99627 209 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 HOPXQ9BPY8 73 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 DDA1Q9BW61 102 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 UCK2Q9BZX2 261 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 VCXQ9H320 206 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 C1orf198Q9H425 327 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TRABDQ9H4I3 376 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 NARFLQ9H6Q4 476 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 ZNF430Q9H8G1 570 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 PLGRKTQ9HBL7 147 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 IFT46Q9NQC8 304 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FBXO8Q9NRD0 319 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 IL36GQ9NZH8 169 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 VAPAQ9P0L0 249 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 CACNG5Q9UF02 275 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 KLHL21Q9UJP4 597 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TP53TG5Q9Y2B4 290 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 METP08581 1390 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 KIF15Q9NS87 1388 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 ERCC6Q03468 1493 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 MED1Q15648 1581 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 MROH7-TTC4A0A0A0MT08 1334 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 CC2D2AQ9P2K1 1620 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 KCNE1BA0A087WTH5 132 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 C9orf170A2RU37 121 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 TRABD2BA6NFA1 517 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 E7EWF7 191 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 G3V4G9 280 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 M0QXV9 152 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 NTN3O00634 580 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 RAB29O14966 203 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SIVA1O15304 175 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 RS1O15537 224 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 AQP9O43315 295 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 FADS1O60427 444 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SRPX2O60687 465 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 RAMP3O60896 148 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SCELO95171 688 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 CA1P00915 261 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 CST1P01037 141 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 IFNA5P01569 189 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 IGLV1-44P01699 117 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 TCRBP04435 133 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SERPIND1P05546 499 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 RBP1P09455 135 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 WNT2P09544 360 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 ZSCAN5DPP0CG00 497 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 KCNE1P15382 129 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 NPR2P20594 1047 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 IMPDH1P20839 514 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 ZP3P21754 424 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 MMP11P24347 488 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 KDELR2P33947 212 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 CFHR2P36980 270 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 RPL13AP40429 203 aaKnown RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 RGRP47804 291 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 NPBWR2P48146 333 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 GABRA4P48169 554 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SRP9P49458 86 aaKnown RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 KPNA2P52292 529 aaKnown RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 EFNB2P52799 333 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 UCNP55089 124 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 RIPPLY1Q0D2K3 151 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 ORC2Q13416 577 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 SLC39A6Q13433 755 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 C1orf61Q13536 156 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 CNPY1Q3B7I2 92 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 ZFP69Q49AA0 526 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 TP53I3Q53FA7 332 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 TNFAIP8L3Q5GJ75 292 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 MS4A13Q5J8X5 152 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 GFI1BQ5VTD9 330 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SYPL2Q5VXT5 272 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 OR2A2Q6IF42 318 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SLC8B1Q6J4K2 584 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 FAHD2BQ6P2I3 314 aaPredicted RBP2.68□□□□□ -1.98
CD44-229ENST00000528672 TMEM107Q6UX40 140 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 SLC16A14Q7RTX9 510 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 NT5DC3Q86UY8 548 aa2.68□□□□□ -1.98
CD44-229ENST00000528672 CALHM1Q8IU99 346 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms