RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PPP1R8Q12972 351 aaKnown RBP8.34□□□□□ -1.07
RNF4-221ENST00000513643 SGCAQ16586 387 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 RSPO1Q2MKA7 263 aaPredicted RBP8.34□□□□□ -1.07
RNF4-221ENST00000513643 KRTAP27-1Q3LI81 207 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 KRT80Q6KB66 452 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 RPL13AP3Q6NVV1 102 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 TMEM179BQ7Z7N9 219 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 LRP11Q86VZ4 500 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 GLB1L2Q8IW92 636 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 LNX2Q8N448 690 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 OR8D4Q8NGM9 314 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 OR1J2Q8NGS2 313 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 FANK1Q8TC84 345 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 C10orf105Q8TEF2 133 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 CCDC124Q96CT7 223 aaKnown RBP8.34□□□□□ -1.07
RNF4-221ENST00000513643 ERMAPQ96PL5 475 aaPredicted RBP8.34□□□□□ -1.07
RNF4-221ENST00000513643 PLA2G12AQ9BZM1 189 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 RACGAP1Q9H0H5 632 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 REV1Q9UBZ9 1251 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 B9D1Q9UPM9 204 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 COA3Q9Y2R0 106 aaPredicted RBP8.34□□□□□ -1.07
RNF4-221ENST00000513643 CMAHPQ9Y471 501 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 SPEF1Q9Y4P9 236 aa8.34□□□□□ -1.07
RNF4-221ENST00000513643 ABCA2Q9BZC7 2435 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 IQCMA0A1B0GVH7 501 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 DHRS12A0PJE2 317 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 OR6C68A6NDL8 312 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 OR6C6A6NF89 314 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 C12orf71A8MTZ7 269 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 FAM171A2A8MVW0 826 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 SOCS2O14508 198 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 SSX4O60224 188 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 SLC16A7O60669 478 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 CCNB2O95067 398 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 MPZL1O95297 269 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 LY6G6DO95868 133 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 TFP02787 698 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 HEXAP06865 529 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 CCL2P13500 99 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 CRABP1P29762 137 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 RPS23P62266 143 aaKnown RBP8.33□□□□□ -1.08
RNF4-221ENST00000513643 PLP2Q04941 152 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 COX10Q12887 443 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 TMEM255AQ5JRV8 349 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 VHLLQ6RSH7 139 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 C1orf174Q8IYL3 243 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 ZNF101Q8IZC7 436 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 SVOPLQ8N434 492 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 ZNF525Q8N782 197 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 AKR7LQ8NHP1 331 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 C11orf40Q8WZ69 217 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 DUS3LQ96G46 650 aaKnown RBP8.33□□□□□ -1.08
RNF4-221ENST00000513643 MARS2Q96GW9 593 aaKnown RBP8.33□□□□□ -1.08
RNF4-221ENST00000513643 TSSK2Q96PF2 358 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 NMNAT3Q96T66 252 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 NMNAT2Q9BZQ4 307 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 KCNN2Q9H2S1 579 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 EGLN3Q9H6Z9 239 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 REEP1Q9H902 201 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 RNF121Q9H920 327 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 NTN4Q9HB63 628 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 EMC7Q9NPA0 242 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 CCNB1IP1Q9NPC3 277 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 MYEF2Q9P2K5 600 aaKnown RBP8.33□□□□□ -1.08
RNF4-221ENST00000513643 ATPIF1Q9UII2 106 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 KLHL21Q9UJP4 597 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 FKBP7Q9Y680 259 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 DNHD1Q96M86 4753 aa8.33□□□□□ -1.08
RNF4-221ENST00000513643 MXRA5Q9NR99 2828 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 RNF223E7ERA6 249 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 NDUFS8O00217 210 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 SYNGR3O43761 229 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 ATP5HO75947 161 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 LY6HO94772 140 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 CST1P01037 141 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 IGHV3-13P01766 116 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 CSF3P09919 207 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 HOXB4P17483 251 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 GSTM3P21266 225 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 GIFP27352 417 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 GGT2P36268 569 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 RAD52P43351 418 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 NUDT6P53370 316 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 RIPPLY3P57055 190 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 ERVS71-1P61550 626 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 LOXL1Q08397 574 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 DBPQ10586 325 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 AQP6Q13520 282 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 PCK2Q16822 640 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 TBC1D28Q2M2D7 210 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 CCDC92Q53HC0 331 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 MBNL2Q5VZF2 373 aaKnown RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 ZNF774Q6NX45 483 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 ASRGL1Q7L266 308 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 VASH1Q7L8A9 365 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 ALDH16A1Q8IZ83 802 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 ZCCHC24Q8N2G6 241 aaKnown RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 AQP11Q8NBQ7 271 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 SLC26A10Q8NG04 563 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 OR4Q3Q8NH05 313 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms