RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 IGHA1P01876 353 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 B4GALT1P15291 398 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 IGHV1-2P23083 117 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 CA7P43166 264 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 PER3P56645 1201 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ARF1P84077 181 aaKnown RBP9.64□□□□□ -0.87
SCN9A-205ENST00000454569 TLE1Q04724 770 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 EMX1Q04741 257 aaPredicted RBP9.64□□□□□ -0.87
SCN9A-205ENST00000454569 POU4F2Q12837 409 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ENDOGQ14249 297 aaKnown RBP9.64□□□□□ -0.87
SCN9A-205ENST00000454569 CDSNQ15517 529 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 OR2G6Q5TZ20 316 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 XAF1Q6GPH4 301 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 OR2A2Q6IF42 318 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ZNF474Q6S9Z5 364 aaPredicted RBP9.64□□□□□ -0.87
SCN9A-205ENST00000454569 HDDC2Q7Z4H3 204 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 CDC20BQ86Y33 519 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 GLB1L2Q8IW92 636 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 SLC35F2Q8IXU6 374 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 UBE2J2Q8N2K1 259 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 LRRC18Q8N456 261 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 STX19Q8N4C7 294 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 SVOPQ8N4V2 548 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 OR6N2Q8NGY6 317 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 SH3GL3Q99963 347 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ISG20L2Q9H9L3 353 aaKnown RBP9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ERVK13-1Q9NX77 482 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ZNF224Q9NZL3 707 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 NDUFA13Q9P0J0 144 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 DIMT1Q9UNQ2 313 aaKnown RBP9.64□□□□□ -0.87
SCN9A-205ENST00000454569 MEMO1Q9Y316 297 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 EMC9Q9Y3B6 208 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 LHFPL6Q9Y693 200 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 HCFC1P51610 2035 aa9.64□□□□□ -0.87
SCN9A-205ENST00000454569 ZNF462Q96JM2 2506 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 A0A096LPE4 126 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SMIM31A0A1B0GVY4 71 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 A0A1W2PPZ6 126 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 RPL36A-HNRNPH2H7BZ11 118 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 RAB36O95755 333 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 FADS2O95864 444 aaKnown RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 LCKP06239 509 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 HOXD4P09016 255 aaPredicted RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 GNLYP22749 145 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ATP6V1E1P36543 226 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ADAM8P78325 824 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 GLO1Q04760 184 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 RBPJQ06330 500 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 TMED1Q13445 227 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 KLHL22Q53GT1 634 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 RIPPLY2Q5TAB7 128 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 LCN1P1Q5VSP4 162 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 FBXW9Q5XUX1 488 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 KLHL24Q6TFL4 600 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SLC16A9Q7RTY1 509 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 PRSS48Q7RTY5 328 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 GPR141Q7Z602 305 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SKA3Q8IX90 412 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ADGRG4Q8IZF6 3080 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ZNF843Q8N446 348 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 RELL2Q8NC24 303 aaPredicted RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 OR10H4Q8NGA5 316 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 OR10S1Q8NGN2 331 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 OR6K3Q8NGY3 331 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 TMIGD2Q96BF3 282 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 FBXO17Q96EF6 278 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 MAP6Q96JE9 813 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 OR5M11Q96RB7 305 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 INTS14Q96SY0 518 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 CNN2Q99439 309 aaKnown RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 FOXB1Q99853 325 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ZNF416Q9BWM5 594 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 TMEM38BQ9NVV0 291 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 UPB1Q9UBR1 384 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 MALT1Q9UDY8 824 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SPTBN1Q01082 2364 aaKnown RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 E9PLN8 166 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 PYCARD-AS1I3L0S3 204 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 CCL21O00585 134 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 LRRTM2O43300 516 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 KRT33AO76009 404 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 LALBAP00709 142 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SPARCP09486 303 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 JUNBP17275 347 aaPredicted RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ALOX5APP20292 161 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ANOS1P23352 680 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 CTSSP25774 331 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 ENTPD1P49961 510 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 TUBA1BP68363 451 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 MRPS34P82930 218 aaKnown RBP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SF3B4Q15427 424 aaKnown RBP eCLIP9.63□□□□□ -0.87
SCN9A-205ENST00000454569 KCNMB1Q16558 191 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 PCK2Q16822 640 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 FOXB2Q5VYV0 432 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 DNM1P34Q6PK57 102 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 CFAP77Q6ZQR2 320 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 PLEKHG7Q6ZR37 379 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 TUBA1AQ71U36 451 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 SPATC1Q76KD6 591 aa9.63□□□□□ -0.87
SCN9A-205ENST00000454569 FJX1Q86VR8 437 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms