RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 WBP4O75554 376 aaKnown RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 APOC1P02654 83 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 LYNP07948 512 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ITGA5P08648 1049 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 MRPL3P09001 348 aaKnown RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 TACSTD2P09758 323 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 SBK2P0C263 348 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 PIPP12273 146 aaPredicted RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 COX5AP20674 150 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 CHN2P52757 468 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ACTA2P62736 377 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ACTG2P63267 376 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ADORA2A-AS1P86434 159 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ZNF91Q05481 1191 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 EIF2B1Q14232 305 aaKnown RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 GGTLC2Q14390 218 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 KCNMB1Q16558 191 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 GSG1Q2KHT4 349 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 TIMM23BQ5SRD1 257 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 UNQ6126/PRO20091Q6UXV3 157 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 TMPRSS11AQ6ZMR5 421 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 NCCRP1Q6ZVX7 275 aaPredicted RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 ZNF627Q7L945 461 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 BCDIN3DQ7Z5W3 292 aaKnown RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 SVOPQ8N4V2 548 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ACBD7Q8N6N7 88 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ZNF511Q8NB15 262 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 FBLIM1Q8WUP2 373 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 SNX33Q8WV41 574 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 NMD3Q96D46 503 aaKnown RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 HCAR1Q9BXC0 346 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 MROQ9BYG7 248 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 ERGIC3Q9Y282 383 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 EXOSC1Q9Y3B2 195 aaKnown RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 COMMD3-BMI1R4GMX3 469 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 NCOA6Q14686 2063 aaPredicted RBP8.87□□□□□ -0.99
CD44-207ENST00000425428 CACNA1CQ13936 2221 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 DCTN6O00399 190 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 MYL12BO14950 172 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 RGS10O43665 173 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 MRPS14O60783 128 aaKnown RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 ZG16O60844 167 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SEC14L2O76054 403 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 HSD11B1P28845 292 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 GABARAPL2P60520 117 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ST3GAL4Q11206 333 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ECH1Q13011 328 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 TBRG1Q3YBR2 411 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 TEX30Q5JUR7 227 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ZNF474Q6S9Z5 364 aaPredicted RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 ARL9Q6T311 187 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 PLEKHG7Q6ZR37 379 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 FOXL2NBQ6ZUU3 175 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 AHSA2Q719I0 299 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 DPY19L4Q7Z388 723 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 KRT77Q7Z794 578 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 RELL2Q8NC24 303 aaPredicted RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 OR1J2Q8NGS2 313 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 HAVCR2Q8TDQ0 301 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 APH1BQ8WW43 257 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SPTSSAQ969W0 71 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SH3GL3Q99963 347 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 MED18Q9BUE0 208 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ACTR6Q9GZN1 396 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SP140LQ9H930 580 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 EMC7Q9NPA0 242 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 PLEK2Q9NYT0 353 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 JKAMPQ9P055 326 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ASH2LQ9UBL3 628 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 IKZF2Q9UKS7 526 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 HIVEP3Q5T1R4 2406 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 IGKV1D-43A0A0B4J1Z2 117 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 CCDC182A6NF36 153 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 OR5H1A6NKK0 313 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SGCEO43556 437 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 XPNPEP2O43895 674 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 KRT8P05787 483 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 GAAP10253 952 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 APLNRP35414 380 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 UGT2B10P36537 528 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 RAB1AP62820 205 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SORDQ00796 357 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 GABRA6Q16445 453 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SMN1Q16637 294 aaKnown RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 FBXL19-AS1Q494R0 122 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 LINC01590Q5TEZ4 76 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 LINGO2Q7L985 606 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 DCXRQ7Z4W1 244 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 KCTD20Q7Z5Y7 419 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 LIX1LQ8IVB5 337 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 OTOSQ8NHW6 89 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 BCL2L2Q92843 193 aaPredicted RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 LGALS12Q96DT0 336 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ZNF416Q9BWM5 594 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 MARCH7Q9H992 704 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 ADGRL4Q9HBW9 690 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 SLC17A5Q9NRA2 495 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 CENPMQ9NSP4 180 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 MRPS18AQ9NVS2 196 aaKnown RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 AASSQ9UDR5 926 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms