RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 C4orf45Q96LM5 186 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 SF3B5Q9BWJ5 86 aaKnown RBP12.22□□□□□ -0.45
PTPRF-202ENST00000372405 MROQ9BYG7 248 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.22□□□□□ -0.456e-7■■■□□ 17.6
PTPRF-202ENST00000372405 PALMDQ9NP74 551 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 FOXD3Q9UJU5 478 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-202ENST00000372405 FBXL3Q9UKT7 428 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 FLVCR1Q9Y5Y0 555 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 LHFPL6Q9Y693 200 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 ACOD1A6NK06 481 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 HSPB2A8KAH6 182 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 LINC01387J3KSC0 135 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 RGS5O15539 181 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 GATBO75879 557 aaKnown RBP12.21□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF133P52736 654 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-202ENST00000372405 PLGLB1Q02325 96 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 HSPB2Q16082 182 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 YIF1BQ5BJH7 314 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 KCTD18Q6PI47 426 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-202ENST00000372405 KRT77Q7Z794 578 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 SYT9Q86SS6 491 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 RDH10Q8IZV5 341 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 OR10AC1Q8NH08 325 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 OR5AK2Q8NH90 309 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 HAVCR2Q8TDQ0 301 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 PPP1R14AQ96A00 147 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 DCBLD2Q96PD2 775 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 ABCB9Q9NP78 766 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 KLK13Q9UKR3 277 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 CDV3Q9UKY7 258 aaKnown RBP12.21□□□□□ -0.45
PTPRF-202ENST00000372405 LIPGQ9Y5X9 500 aa12.21□□□□□ -0.45
PTPRF-202ENST00000372405 TAF4O00268 1085 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF708P17019 499 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 CSNK1A1P48729 337 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 PPP5CP53041 499 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 PPIAP62937 165 aaKnown RBP12.21□□□□□ -0.46
PTPRF-202ENST00000372405 DEFB109BQ30KR1 87 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 C11orf91Q3C1V1 193 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 CEP78Q5JTW2 689 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 IGFL2Q6UWQ7 119 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 PLXDC2Q6UX71 529 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 IL17RDQ8NFM7 739 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 OR51A4Q8NGJ6 313 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 RNF133Q8WVZ7 376 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 WDFY2Q96P53 400 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 DERL3Q96Q80 235 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 SMAD5Q99717 465 aaKnown RBP12.21□□□□□ -0.46
PTPRF-202ENST00000372405 SEC61A2Q9H9S3 476 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 NOX4Q9NPH5 578 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 SLC22A13Q9Y226 551 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 B3GNT3Q9Y2A9 372 aa12.21□□□□□ -0.46
PTPRF-202ENST00000372405 TNRC6AQ8NDV7 1962 aaKnown RBP12.2□□□□□ -0.46
PTPRF-202ENST00000372405 TRAV1-2A0A0B4J238 106 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 TRBV5-5A0A0J9YX44 114 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 DCDC2BA2VCK2 349 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF891A8MT65 544 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF879B4DU55 563 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 TLX3O43711 291 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-202ENST00000372405 CD40LGP29965 261 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 THBS2P35442 1172 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 KCNMB1Q16558 191 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 ODF4Q2M2E3 257 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 C10orf128Q5T292 105 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 PAMR1Q6UXH9 720 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 CFAP77Q6ZQR2 320 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 TPRA1Q86W33 373 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 OR10H5Q8NGA6 315 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 OR6N1Q8NGY5 312 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 CPNE4Q96A23 557 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF837Q96EG3 531 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-202ENST00000372405 DTNBP1Q96EV8 351 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 SDHCQ99643 169 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-202ENST00000372405 B3GAT2Q9NPZ5 323 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 POLE4Q9NR33 117 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 CMAHPQ9Y471 501 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 V9GYH0 126 aa12.2□□□□□ -0.46
PTPRF-202ENST00000372405 TMEM212A6NML5 194 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 CYTIPO60759 359 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 MYL9P24844 172 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 RIDAP52758 137 aaKnown RBP12.19□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF45Q02386 682 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 SRYQ05066 204 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 SLC25A35Q3KQZ1 300 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 CATSPERDQ86XM0 798 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 C20orf196Q8IYI0 205 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 ABHD3Q8WU67 409 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 AP3S1Q92572 193 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 SLC30A2Q9BRI3 323 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 KCNMB2Q9Y691 235 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 PRRC2CQ9Y520 2896 aaKnown RBP12.19□□□□□ -0.46
PTPRF-202ENST00000372405 URB1O60287 2271 aaKnown RBP12.19□□□□□ -0.46
PTPRF-202ENST00000372405 H3BSH0 61 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF254O75437 659 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 ARL6IP5O75915 188 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 SPINK2P20155 84 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 CCR9P51686 369 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 PMP22Q01453 160 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 RASGEF1BQ0VAM2 473 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 RSPO4Q2I0M5 234 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-202ENST00000372405 Q499Y3 187 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms