RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CALB2P22676 271 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 NPY4RP50391 375 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 RAP2BP61225 183 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 TESK1Q15569 626 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 COX4I2Q96KJ9 171 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 ERVK13-1Q9NX77 482 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 ZDHHC9Q9Y397 364 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 LOC100506127A0A0U1RQW1 187 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 PIAS1O75925 651 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 FOXO1Q12778 655 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 SLCO4C1Q6ZQN7 724 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 NRMQ8IXM6 262 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 SLCO2A1Q92959 643 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 GPR78Q96P69 363 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 EMC6Q9BV81 110 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 LRRC3Q9BY71 257 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CXCL16Q9H2A7 254 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 IL19Q9UHD0 177 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 STRCP1A6NGW2 1772 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 ABCA1O95477 2261 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CACNA1SQ13698 1873 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ABCA2Q9BZC7 2435 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 FAM183AA6NL82 134 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 TMEM229AB2RXF0 380 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 IGLV3-19P01714 112 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 BMP6P22004 513 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 HOXA1P49639 335 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 UBE2IP63279 158 aaKnown RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 FAM106AQ4KMX7 169 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ANKRD22Q5VYY1 191 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 TRMT10BQ6PF06 316 aaKnown RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZDHHC23Q8IYP9 409 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 DNAJC9Q8WXX5 260 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 RFT1Q96AA3 541 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CXXC4Q9H2H0 198 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF665Q9H7R5 613 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ACER3Q9NUN7 267 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 C19orf53Q9UNZ5 99 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 MYH9P35579 1960 aaKnown RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 A6NNC1 897 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CSN1S1P47710 185 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CD97P48960 835 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 LCN2P80188 198 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 SWI5Q1ZZU3 235 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 TBRG1Q3YBR2 411 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CYBRD1Q53TN4 286 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 THEM4Q5T1C6 240 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZFP1Q6P2D0 407 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF843Q8N446 348 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 DNAJC22Q8N4W6 341 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ASB17Q8WXJ9 295 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 UFD1Q92890 307 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 SMIM14Q96QK8 99 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 PPA2Q9H2U2 334 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 SIRT3Q9NTG7 399 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 RABAC1Q9UI14 185 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZDHHC8Q9ULC8 765 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 HHLA2Q9UM44 414 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CACNA1CQ13936 2221 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 FCER2P06734 321 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 PSKH1P11801 424 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 HADHBP55084 474 aaKnown RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 UBE2KP61086 200 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CCDC28AQ8IWP9 274 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 OR8H2Q8N162 312 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 WDTC1Q8N5D0 677 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 SEMA6DQ8NFY4 1073 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 OR2A1Q8NGT9 310 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 NT5CQ8TCD5 201 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CGREF1Q99674 301 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CMSS1Q9BQ75 279 aaKnown RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF443Q9Y2A4 671 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 TIAM2Q8IVF5 1701 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 FAAHO00519 579 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 HSPB6O14558 160 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 NUDT7P0C024 238 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CD36P16671 472 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 FAM27E3Q08E93 113 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 CCDC92Q53HC0 331 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 PLBD1Q6P4A8 553 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 USP43Q70EL4 1123 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 MOGAT3Q86VF5 341 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 SLC16A11Q8NCK7 471 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 BPIFB6Q8NFQ5 453 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 OR52H1Q8NGJ2 320 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 WDR20Q8TBZ3 569 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 SNX22Q96L94 193 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 FYTTD1Q96QD9 318 aaKnown RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF552Q9H707 407 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-203ENST00000341423 URGCP-MRPS24S4R325 110 aa7.53□□□□□ -1.2
HMGB1-203ENST00000341423 EDF1O60869 148 aaKnown RBP7.52□□□□□ -1.2
HMGB1-203ENST00000341423 MPIG6BO95866 241 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 GLAP06280 429 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 HTN3P15516 51 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 PRKACAP17612 351 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 RPS4Y1P22090 263 aaKnown RBP7.52□□□□□ -1.2
HMGB1-203ENST00000341423 GPR4P46093 362 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 GPR12P47775 334 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms