RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TNFRSF13CQ96RJ3 184 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 UGT2A1Q9Y4X1 527 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 UNC119BA6NIH7 251 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 FPR3P25089 353 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 GSSP48637 474 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 RPL27P61353 136 aaKnown RBP16.6■□□□□ 0.25
CLN3-260ENST00000637578 MRPS34P82930 218 aaKnown RBP16.6■□□□□ 0.25
CLN3-260ENST00000637578 MYBPC1Q00872 1141 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 SNTB2Q13425 540 aaKnown RBP16.6■□□□□ 0.25
CLN3-260ENST00000637578 RAB39AQ14964 217 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 C10orf67Q8IYJ2 551 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 AQP11Q8NBQ7 271 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 OR10G2Q8NGC3 310 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 C10orf105Q8TEF2 133 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 GIPC3Q8TF64 312 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 ALG12Q9BV10 488 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 ZNF346Q9UL40 294 aaKnown RBP16.6■□□□□ 0.25
CLN3-260ENST00000637578 SIGLEC7Q9Y286 467 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 CR1P17927 2039 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 GASTP01350 101 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 CSF3P09919 207 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 ZNF26P17031 533 aaPredicted RBP16.6■□□□□ 0.25
CLN3-260ENST00000637578 ZNF84P51523 738 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 CTXN1P60606 82 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 MSMPQ1L6U9 139 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 ZBED5Q49AG3 693 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 KRT80Q6KB66 452 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 SLC25A47Q6Q0C1 308 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 ZNF519Q8TB69 540 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 GNPDA2Q8TDQ7 276 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 FAM168AQ92567 244 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 SIAEQ9HAT2 523 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 S100A14Q9HCY8 104 aa16.6■□□□□ 0.25
CLN3-260ENST00000637578 PDP1Q9P0J1 537 aaPredicted RBP16.6■□□□□ 0.25
CLN3-260ENST00000637578 IGKV1D-43A0A0B4J1Z2 117 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 ARRDC5A6NEK1 342 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 PTP4A3O75365 173 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 LY6HO94772 140 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 SLC2A10O95528 541 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 IGFBP1P08833 259 aaPredicted RBP16.59■□□□□ 0.25
CLN3-260ENST00000637578 MMP7P09237 267 aaPredicted RBP16.59■□□□□ 0.25
CLN3-260ENST00000637578 NR2C1P13056 603 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 SLC25A16P16260 332 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 GLRXP35754 106 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 EVX1P49640 407 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 FXYD6P3P58550 94 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 TSPAN31Q12999 210 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 SLC36A2Q495M3 483 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 THEM4Q5T1C6 240 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 FAM205BPQ63HN1 556 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 IGFN1Q86VF2 1251 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 NABP1Q96AH0 204 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 TSPAN32Q96QS1 320 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 CMAHPQ9Y471 501 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 SPEF1Q9Y4P9 236 aa16.59■□□□□ 0.25
CLN3-260ENST00000637578 FMODQ06828 376 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 LOXL1Q08397 574 aaPredicted RBP16.58■□□□□ 0.24
CLN3-260ENST00000637578 SHQ1Q6PI26 577 aaKnown RBP16.58■□□□□ 0.24
CLN3-260ENST00000637578 SLC16A14Q7RTX9 510 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 SVOPLQ8N434 492 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 FNDC8Q8TC99 324 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 MRPL24Q96A35 216 aaKnown RBP16.58■□□□□ 0.24
CLN3-260ENST00000637578 FEVQ99581 238 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 PKP2Q99959 881 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 DGCR6LQ9BY27 220 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 SEMA6AQ9H2E6 1030 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 FKBP7Q9Y680 259 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 ABCA1O95477 2261 aa16.58■□□□□ 0.24
CLN3-260ENST00000637578 A6NIZ1 184 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 VWC2LB2RUY7 222 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 GPRIN2O60269 458 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 PRKACGP22612 351 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 RAP1BP61224 184 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 RAP1AP62834 184 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 TOP3AQ13472 1001 aaPredicted RBP16.57■□□□□ 0.24
CLN3-260ENST00000637578 TMEM53Q6P2H8 277 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 THSD4Q6ZMP0 1018 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 ARIH2OSQ8N7S6 290 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 OR5K1Q8NHB7 308 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 FANK1Q8TC84 345 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 NRBF2Q96F24 287 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 CENPNQ96H22 339 aaPredicted RBP16.57■□□□□ 0.24
CLN3-260ENST00000637578 RBP7Q96R05 134 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 VRK1Q99986 396 aaPredicted RBP16.57■□□□□ 0.24
CLN3-260ENST00000637578 NIPSNAP1Q9BPW8 284 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 C1orf198Q9H425 327 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 MYOZ1Q9NP98 299 aaPredicted RBP16.57■□□□□ 0.24
CLN3-260ENST00000637578 IL20RAQ9UHF4 553 aa16.57■□□□□ 0.24
CLN3-260ENST00000637578 CD5LO43866 347 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 NDUFB2O95178 105 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 SNAP29O95721 258 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 CDAP32320 146 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 ARHGDIAP52565 204 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 FAM27BQ5VT28 67 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 ZNF620Q6ZNG0 422 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 FOXL2NBQ6ZUU3 175 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 CLDN22Q8N7P3 220 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 SLC30A7Q8NEW0 376 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 STMN2Q93045 179 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 MRPL37Q9BZE1 423 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms