RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 C12orf71A8MTZ7 269 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 E7EQL1 145 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ATP6V1G2-DDX39BF2Z307 99 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 SEC14L2O76054 403 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 RENP00797 406 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 COX5BP10606 129 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ZNF35P13682 527 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 LAP3P28838 519 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ART1P52961 327 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ACTR3P61158 418 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 NKX6-1P78426 367 aaPredicted RBP15.85■□□□□ 0.13
CLN3-259ENST00000637551 MYBPC1Q00872 1141 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 GLO1Q04760 184 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 EFNB3Q15768 340 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ATP6AP1Q15904 470 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ZFP1Q6P2D0 407 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ZBTB46Q86UZ6 589 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ALDH16A1Q8IZ83 802 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 PARP8Q8N3A8 854 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 RASD2Q96D21 266 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 SAMD8Q96LT4 415 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 FEVQ99581 238 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 SYT4Q9H2B2 425 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 CCNB1IP1Q9NPC3 277 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 POLE4Q9NR33 117 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 CA10Q9NS85 328 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ENOPH1Q9UHY7 261 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 KCNG2Q9UJ96 466 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 KLHL21Q9UJP4 597 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 MOKQ9UQ07 419 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 AP4S1Q9Y587 144 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 ARFGEF3Q5TH69 2177 aa15.85■□□□□ 0.13
CLN3-259ENST00000637551 IGKV1D-43A0A0B4J1Z2 117 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 IQCMA0A1B0GVH7 501 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 SOCS2O14508 198 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 PPP1R3DO95685 299 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 CTLA4P16410 223 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 NR4A1P22736 598 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 FASP25445 335 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 EVX1P49640 407 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 TUBA1BP68363 451 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 TUBA4AP68366 448 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 SPOCK1Q08629 439 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 SCRN3Q0VDG4 424 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 NPRL3Q12980 569 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 AQP6Q13520 282 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 C11orf71Q6IPW1 123 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 PTCHD4Q6ZW05 846 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 TUBA1AQ71U36 451 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 HIPK1Q86Z02 1210 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 MUC15Q8N387 334 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 SVOPLQ8N434 492 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 TRMT61AQ96FX7 289 aaKnown RBP15.84■□□□□ 0.13
CLN3-259ENST00000637551 C1QTNF6Q9BXI9 259 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 BARX1Q9HBU1 254 aaPredicted RBP15.84■□□□□ 0.13
CLN3-259ENST00000637551 TBC1D23Q9NUY8 699 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 TIMM10BQ9Y5J6 103 aa15.84■□□□□ 0.13
CLN3-259ENST00000637551 H7C417 338 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 J3QW42 95 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 IFNGP01579 166 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 HIST1H1CP16403 213 aaKnown RBP15.83■□□□□ 0.12
CLN3-259ENST00000637551 TUBG1P23258 451 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 CDKN2AP42771 156 aaKnown RBP15.83■□□□□ 0.12
CLN3-259ENST00000637551 BLVRAP53004 296 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 TBC1D28Q2M2D7 210 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 B3GLCTQ6Y288 498 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 ZNF584Q8IVC4 421 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 TEX47Q8TBZ9 253 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 NSMAFQ92636 917 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 RAB3IPQ96QF0 476 aaPredicted RBP15.83■□□□□ 0.12
CLN3-259ENST00000637551 SH3GL3Q99963 347 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 NTN4Q9HB63 628 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 NOX3Q9HBY0 568 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 TUBG2Q9NRH3 451 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 PDP1Q9P0J1 537 aaPredicted RBP15.83■□□□□ 0.12
CLN3-259ENST00000637551 IL20RAQ9UHF4 553 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 NDRG4Q9ULP0 352 aaKnown RBP15.83■□□□□ 0.12
CLN3-259ENST00000637551 LAMP3Q9UQV4 416 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 RTTNQ86VV8 2226 aa15.83■□□□□ 0.12
CLN3-259ENST00000637551 FLNAP21333 2647 aaKnown RBP15.82■□□□□ 0.12
CLN3-259ENST00000637551 IGLV1-36A0A0B4J1U3 117 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 B9A039 149 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 H3BSA7 217 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 SLC16A7O60669 478 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 TP53P04637 393 aaPredicted RBP15.82■□□□□ 0.12
CLN3-259ENST00000637551 SOD3P08294 240 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 CALCRP30988 508 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 GRK5P34947 590 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 GLRXP35754 106 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 GALK2Q01415 458 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 CCNIQ14094 377 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 FAHD1Q6P587 224 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 NPEPL1Q8NDH3 523 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 SLC30A7Q8NEW0 376 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 OR2T4Q8NH00 348 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 OR5K1Q8NHB7 308 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 DDOQ99489 341 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 TEX12Q9BXU0 123 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 PLA2G12AQ9BZM1 189 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 BCL2L14Q9BZR8 327 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms