RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 BCL2L14Q9BZR8 327 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 LRMDAQ9H2I8 198 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 RNF121Q9H920 327 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 CDH20Q9HBT6 801 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 CLDN25C9JDP6 229 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 CXCR6O00574 342 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 PRSS23O95084 383 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 BCL10O95999 233 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 IGHV2-5P01817 119 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 MT-ND5P03915 603 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 HIST1H2ABP04908 130 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 LCKP06239 509 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 QDPRP09417 244 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 MAKP20794 623 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 PLP2Q04941 152 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 FHL1Q13642 323 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 TBC1D28Q2M2D7 210 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 AWAT1Q58HT5 328 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 ARMC4Q5T2S8 1044 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 AVPI1Q5T686 147 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 HACD2Q6Y1H2 254 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 CBLL1Q75N03 491 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 HIST3H2AQ7L7L0 130 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 PAQR4Q8N4S7 273 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-212ENST00000597995 ASB10Q8WXI3 467 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 RAB1CQ92928 201 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 HIST1H2ACQ93077 130 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 MCHR2Q969V1 340 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 NMD3Q96D46 503 aaKnown RBP10.65□□□□□ -0.7
TRIM28-212ENST00000597995 TIMD4Q96H15 378 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 TSPAN32Q96QS1 320 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 ZNF347Q96SE7 839 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 SH3GL3Q99963 347 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 HOPXQ9BPY8 73 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-212ENST00000597995 EFCAB1Q9HAE3 211 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 DECR2Q9NUI1 292 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 RHCGQ9UBD6 479 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 ABCD2Q9UBJ2 740 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 AP3M1Q9Y2T2 418 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 MED31Q9Y3C7 131 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 WIPI2Q9Y4P8 454 aa10.65□□□□□ -0.7
TRIM28-212ENST00000597995 IGKV1D-43A0A0B4J1Z2 117 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 IQCMA0A1B0GVH7 501 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 SNX3O60493 162 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 TRMUO75648 421 aaKnown RBP10.64□□□□□ -0.71
TRIM28-212ENST00000597995 IGHV3-13P01766 116 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 CCL2P13500 99 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 NCK1P16333 377 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 FPR2P25090 351 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 NUDT2P50583 147 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF133P52736 654 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-212ENST00000597995 GYS2P54840 703 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 ST3GAL3Q11203 375 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 HFEQ30201 348 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 FAM209AQ5JX71 171 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 DCAF12L2Q5VW00 463 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 USP51Q70EK9 711 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 SLC16A14Q7RTX9 510 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 OFCC1Q8IZS5 231 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 BPIFB2Q8N4F0 458 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 LRRC75AQ8NAA5 344 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 RBM15BQ8NDT2 890 aaKnown RBP10.64□□□□□ -0.71
TRIM28-212ENST00000597995 OR4K5Q8NGD3 323 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 NTN4Q9HB63 628 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 INIPQ9NRY2 104 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 HIF3AQ9Y2N7 669 aa10.64□□□□□ -0.71
TRIM28-212ENST00000597995 A0A1W2PRG6 482 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 CENPBD1B2RD01 187 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 TPD52L2O43399 206 aaKnown RBP10.63□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF682O95780 498 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 SERPINA1P01009 418 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 FSHBP01225 129 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 IGHG1P01857 330 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 IFI30P13284 250 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 ACADSP16219 412 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 PSME3P61289 254 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 ERVS71-1P61550 626 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 PRR31Q5SQ13 230 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 TBPL2Q6SJ96 375 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 ZDHHC22Q8N966 263 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 SYT14Q8NB59 555 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 NOXO1Q8NFA2 376 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 LZICQ8WZA0 190 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 HDAC2Q92769 488 aaKnown RBP10.63□□□□□ -0.71
TRIM28-212ENST00000597995 BPIFA2Q96DR5 249 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 ELMOD3Q96FG2 381 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 HSH2DQ96JZ2 352 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 SLC6A7Q99884 636 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF747Q9BV97 191 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 FAM107BQ9H098 131 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 OR51B6Q9H340 312 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 C7orf69Q9H7B7 122 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 SAP30LQ9HAJ7 183 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 UGT2A1Q9Y4X1 527 aa10.63□□□□□ -0.71
TRIM28-212ENST00000597995 MEGF8Q7Z7M0 2845 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 PPIAL4EA0A075B759 164 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 A0A087WUU8 490 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 PPIAL4CA0A0B4J2A2 164 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 NPIPB13A6NJU9 1138 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 NPIPB4C9JG80 1138 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms