RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 NEK7Q8TDX7 302 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PTP4A3O75365 173 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 HIST1H2AGP0C0S8 130 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 HIST1H2ADP20671 130 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PDGFRLQ15198 375 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR10H5Q8NGA6 315 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SAMD8Q96LT4 415 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 HIST1H2AJQ99878 128 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 H2AFJQ9BTM1 129 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 IPPKQ9H8X2 491 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PCDHB11Q9Y5F2 797 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 KPTNQ9Y664 436 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 IFNL4K9M1U5 179 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 DNPH1O43598 174 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MFSD11O43934 449 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 LINC00614P0C842 121 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MPZP25189 248 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 THBS4P35443 961 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FASLGP48023 281 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PMS2P11Q13670 270 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TTC32Q5I0X7 151 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SLC16A12Q6ZSM3 486 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CALHM3Q86XJ0 350 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CMTM7Q96FZ5 175 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SPACA5Q96QH8 159 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 AGO1Q9UL18 857 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SMPD2O60906 423 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CLDN7O95471 211 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GCGP01275 180 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GIPRP48546 466 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OR8D1Q8WZ84 308 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OR1F2PQ96R84 312 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ZBTB20Q9HC78 741 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NDRG2Q9UN36 371 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 A0A1B0GTL3 188 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 hCG_1807616A0A1W2PRN6 198 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MAP2K6P52564 334 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 C3orf36Q3SXR2 165 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TRMT12Q53H54 448 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF628Q5EBL2 1059 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FOXRED1Q96CU9 486 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MAGEH1Q9H213 219 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FBXW11Q9UKB1 542 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SLC22A14Q9Y267 594 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 LIPGQ9Y5X9 500 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 HAS3O00219 553 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SDHDO14521 159 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CLN5O75503 358 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PMS2P2O95744 297 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MAOAP21397 527 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OR12D2P58182 307 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NHLH2Q02577 135 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GUCA2AQ02747 115 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SGCAQ16586 387 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 COL5A1-AS1Q5SY13 56 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 WFDC3Q8IUB2 231 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NUS1Q96E22 293 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SERTAD4Q9NUC0 356 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 hCG_1809904A0A1W2PP81 198 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 A0A1W2PR64 198 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GABARAPH6UMI1 98 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GABRB3P28472 473 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CILP2Q8IUL8 1156 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FAM46BQ96A09 425 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ASB8Q9H765 288 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 BET1LQ9NYM9 111 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MT-ND5P03915 603 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 LPOP22079 712 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 DTYMKP23919 212 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GPR4P46093 362 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CAMLGP49069 296 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM241Q24JQ0 296 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SUMF1Q8NBK3 374 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 B3GNT7Q8NFL0 401 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 M1APQ8TC57 530 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FAM131CQ96AQ9 280 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FAM183AA6NL82 134 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 P2RY10O00398 339 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 HSPB6O14558 160 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ASPAP45381 313 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ACOT7LQ6ZUV0 252 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FAM220AQ7Z4H9 259 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MARCH3Q86UD3 253 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 LILRA3Q8N6C8 439 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OR10G4Q8NGN3 311 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 H7C1C5 153 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FOXE1O00358 373 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CCL16O15467 120 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CXCL14O95715 111 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 KNG1P01042 644 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FXYD4P59646 89 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 LCN6P62502 163 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 COX20Q5RI15 118 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 C12orf40Q86WS4 652 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OR10K1Q8NGX5 313 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TNFRSF14Q92956 283 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NGBQ9NPG2 151 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FBLL1A6NHQ2 334 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MMP23AO75900 390 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MVDP53602 400 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms