RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ING1Q9UK53 422 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-202ENST00000338045 SSUH2Q9Y2M2 353 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 LOC400499M0QZD8 3231 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 AQP8O94778 261 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 SPARCP09486 303 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 LAP3P28838 519 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 INSL4Q14641 139 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 SLC10A1Q14973 349 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 INAQ16352 499 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 LRFN4Q6PJG9 635 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 FAM220AQ7Z4H9 259 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 OR6Q1Q8NGQ2 317 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 MCFD2Q8NI22 146 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 NSMAFQ92636 917 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 TMEM54Q969K7 222 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 TTYH2Q9BSA4 534 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 SCNM1Q9BWG6 230 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 KCNN2Q9H2S1 579 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 ZDHHC11Q9H8X9 412 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 GALNT8Q9NY28 637 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 GLTPQ9NZD2 209 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 ACOT7O00154 380 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 CYTIPO60759 359 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF823P16415 610 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 SPINK2P20155 84 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 EDNRAP25101 427 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 SOX6P35712 828 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 PSMB10P40306 273 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 GDI2P50395 445 aaKnown RBP13.73□□□□□ -0.21
LIMS1-202ENST00000338045 SMUG1Q53HV7 270 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 CARD17Q5XLA6 110 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF679Q8IYX0 411 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 SNIP1Q8TAD8 396 aaKnown RBP13.73□□□□□ -0.21
LIMS1-202ENST00000338045 ABHD4Q8TB40 342 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 C11orf40Q8WZ69 217 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 ABHD6Q9BV23 337 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 SLCO1C1Q9NYB5 712 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 ZMAT5Q9UDW3 170 aaKnown RBP13.73□□□□□ -0.21
LIMS1-202ENST00000338045 FOXD3Q9UJU5 478 aaPredicted RBP13.73□□□□□ -0.21
LIMS1-202ENST00000338045 RCE1Q9Y256 329 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 FLVCR1Q9Y5Y0 555 aa13.73□□□□□ -0.21
LIMS1-202ENST00000338045 TRAV17A0A0B4J275 112 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 TRBV2A0A0J9YWF9 115 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 CD8B2A6NJW9 211 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 DLL1O00548 723 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 GPRIN2O60269 458 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 CDRT1O95170 752 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ACTL6AO96019 429 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 QDPRP09417 244 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 CD8BP10966 210 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 SDC2P34741 201 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 BMXP51813 675 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 NANOS3P60323 173 aaKnown RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 RNFT1Q5M7Z0 435 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 C10orf128Q5T292 105 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 LRRC69Q6ZNQ3 347 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 YIPF7Q8N8F6 280 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ST7LQ8TDW4 575 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ROBO4Q8WZ75 1007 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ABTB1Q969K4 478 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 SLC25A46Q96AG3 418 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 INTS12Q96CB8 462 aaKnown RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF845Q96IR2 970 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 BARHL1Q9BZE3 327 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 IKZF2Q9UKS7 526 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 DVL2O14641 736 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 OPRL1P41146 370 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 CSNK1A1P48729 337 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 RORCP51449 518 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 RPS11P62280 158 aaKnown RBP eCLIP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 EIF2B1Q14232 305 aaKnown RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 KCNMB1Q16558 191 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 FDX2Q6P4F2 183 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 KCTD18Q6PI47 426 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 OR52N5Q8NH56 324 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 NEIL3Q8TAT5 605 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 HSD17B8Q92506 261 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 MAP6Q96JE9 813 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 SNTG1Q9NSN8 517 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 PAQR5Q9NXK6 330 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-202ENST00000338045 CYB5R1Q9UHQ9 305 aa13.72□□□□□ -0.21
LIMS1-202ENST00000338045 ZFHX4Q86UP3 3567 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 AKAP13Q12802 2813 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 CFAP47Q6ZTR5 3102 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 A0A075B6Q4 140 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 SHISA3A0PJX4 238 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 SERPINA3P01011 423 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 ITGB2P05107 769 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 SELENOPP49908 381 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 ALKBH1Q13686 389 aaKnown RBP13.71□□□□□ -0.21
LIMS1-202ENST00000338045 LRRN1Q6UXK5 716 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 FOXL2NBQ6ZUU3 175 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 FCRLAQ7L513 359 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 C20orf196Q8IYI0 205 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 MEIOBQ8N635 442 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 RNF128Q8TEB7 428 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 PNPLA2Q96AD5 504 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 PDCD1LG2Q9BQ51 273 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 MROQ9BYG7 248 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms