RNA–Protein interactions for RNA: snR56

snR56, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR56, Length 88 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR56	snR56	MTR3	P48240	250 aa	Predicted RBP	4.66	□□□□□ -1.66
snR56	snR56	UBC9	P50623	157 aa	Predicted RBP	4.66	□□□□□ -1.66
snR56	snR56	MTL1	P53214	551 aa		4.66	□□□□□ -1.66
snR56	snR56	FHN1	P53279	174 aa		4.66	□□□□□ -1.66
snR56	snR56	YGR283C	P53336	341 aa	Predicted RBP	4.66	□□□□□ -1.66
snR56	snR56	RPL8B	P29453	256 aa	Known RBP	4.65	□□□□□ -1.67
snR56	snR56	FMO1	P38866	432 aa		4.65	□□□□□ -1.67
snR56	snR56	LYS9	P38999	446 aa		4.65	□□□□□ -1.67
snR56	snR56	GYP8	P43570	497 aa		4.65	□□□□□ -1.67
snR56	snR56	MRK1	P50873	501 aa		4.65	□□□□□ -1.67
snR56	snR56	ATG4	P53867	494 aa		4.65	□□□□□ -1.67
snR56	snR56	ALD6	P54115	500 aa	Known RBP	4.65	□□□□□ -1.67
snR56	snR56	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
snR56	snR56	ZIP2	P53061	704 aa		4.64	□□□□□ -1.67
snR56	snR56	EAF1	Q06337	982 aa		4.64	□□□□□ -1.67
snR56	snR56	YBR182C-A	Q8TGU6	64 aa		4.64	□□□□□ -1.67
snR56	snR56	UBP6	P43593	499 aa	Known RBP	4.63	□□□□□ -1.67
snR56	snR56	ERP6	P53198	216 aa		4.63	□□□□□ -1.67
snR56	snR56	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
snR56	snR56	MVD1	P32377	396 aa	Known RBP	4.62	□□□□□ -1.67
snR56	snR56	LTP1	P40347	161 aa		4.62	□□□□□ -1.67
snR56	snR56	REH1	Q06709	432 aa		4.62	□□□□□ -1.67
snR56	snR56	PTP1	P25044	335 aa		4.61	□□□□□ -1.67
snR56	snR56	SPC29	P33419	253 aa		4.61	□□□□□ -1.67
snR56	snR56	PHO11	P35842	467 aa		4.61	□□□□□ -1.67
snR56	snR56	PHO12	P38693	467 aa		4.61	□□□□□ -1.67
snR56	snR56	MUP3	P38734	546 aa		4.61	□□□□□ -1.67
snR56	snR56	NUP60	P39705	539 aa		4.61	□□□□□ -1.67
snR56	snR56	CTK1	Q03957	528 aa	Known RBP	4.61	□□□□□ -1.67
snR56	snR56	RGC1	Q06108	1083 aa	Known RBP	4.61	□□□□□ -1.67
snR56	snR56	MLH3	Q12083	715 aa		4.61	□□□□□ -1.67
snR56	snR56	RGT2	Q12300	763 aa		4.61	□□□□□ -1.67
snR56	snR56	CCR4	P31384	837 aa	Known RBP	4.6	□□□□□ -1.67
snR56	snR56	NET1	P47035	1189 aa		4.6	□□□□□ -1.67
snR56	snR56	HXT16	P47185	567 aa		4.6	□□□□□ -1.67
snR56	snR56	PRP31	P49704	494 aa	Predicted RBP	4.6	□□□□□ -1.67
snR56	snR56	GRX1	P25373	110 aa	Known RBP	4.59	□□□□□ -1.67
snR56	snR56	YHR112C	P38716	378 aa		4.59	□□□□□ -1.67
snR56	snR56	SPO75	Q07798	868 aa		4.59	□□□□□ -1.67
snR56	snR56	SLK19	Q08581	821 aa	Known RBP	4.59	□□□□□ -1.67
snR56	snR56	PGK1	P00560	416 aa	Known RBP	4.58	□□□□□ -1.68
snR56	snR56	ERG11	P10614	530 aa		4.58	□□□□□ -1.68
snR56	snR56	ADE2	P21264	571 aa	Known RBP	4.58	□□□□□ -1.68
snR56	snR56	ARE1	P25628	610 aa		4.58	□□□□□ -1.68
snR56	snR56	YDR514C	Q04408	483 aa		4.58	□□□□□ -1.68
snR56	snR56	THR1	P17423	357 aa	Known RBP	4.57	□□□□□ -1.68
snR56	snR56	APL2	P36000	726 aa	Predicted RBP	4.57	□□□□□ -1.68
snR56	snR56	RLP7	P40693	322 aa	Known RBP	4.57	□□□□□ -1.68
snR56	snR56	SHR5	P41912	237 aa		4.57	□□□□□ -1.68
snR56	snR56	BPL1	P48445	690 aa	Predicted RBP	4.57	□□□□□ -1.68
snR56	snR56	YBP2	P53169	641 aa		4.57	□□□□□ -1.68
snR56	snR56	ATP25	Q03153	612 aa		4.57	□□□□□ -1.68
snR56	snR56	HRP1	Q99383	534 aa	Known RBP	4.57	□□□□□ -1.68
snR56	snR56	ERG6	P25087	383 aa	Known RBP	4.56	□□□□□ -1.68
snR56	snR56	FUB1	P25659	250 aa		4.56	□□□□□ -1.68
snR56	snR56	TRZ1	P36159	838 aa	Predicted RBP	4.56	□□□□□ -1.68
snR56	snR56	XBP1	P40489	647 aa		4.56	□□□□□ -1.68
snR56	snR56	ZDS1	P50111	915 aa	Known RBP	4.56	□□□□□ -1.68
snR56	snR56	ARG5,6	Q01217	863 aa		4.56	□□□□□ -1.68
snR56	snR56	MET7	Q08645	548 aa		4.56	□□□□□ -1.68
snR56	snR56	DIF1	O13577	133 aa		4.55	□□□□□ -1.68
snR56	snR56	MPS1	P54199	764 aa		4.55	□□□□□ -1.68
snR56	snR56	NAN1	Q02931	896 aa	Known RBP	4.55	□□□□□ -1.68
snR56	snR56	CIR2	Q08822	631 aa		4.55	□□□□□ -1.68
snR56	snR56	USV1	Q12132	391 aa		4.55	□□□□□ -1.68
snR56	snR56	ZRT2	Q12436	422 aa		4.55	□□□□□ -1.68
snR56	snR56	YLR149C	Q99296	730 aa		4.55	□□□□□ -1.68
snR56	snR56	SET3	P36124	751 aa		4.54	□□□□□ -1.68
snR56	snR56	GMH1	P36125	273 aa		4.54	□□□□□ -1.68
snR56	snR56	MCM21	Q06675	368 aa		4.54	□□□□□ -1.68
snR56	snR56	ALG2	P43636	503 aa		4.53	□□□□□ -1.68
snR56	snR56	STB2	P46679	850 aa		4.53	□□□□□ -1.68
snR56	snR56	TY4A-J	P47023	414 aa		4.53	□□□□□ -1.68
snR56	snR56	TAF8	Q03750	510 aa		4.53	□□□□□ -1.68
snR56	snR56	YDR338C	Q05497	695 aa		4.53	□□□□□ -1.68
snR56	snR56	SSF2	Q12153	453 aa	Predicted RBP	4.53	□□□□□ -1.68
snR56	snR56	TOM70	P07213	617 aa	Known RBP	4.52	□□□□□ -1.69
snR56	snR56	NUP1	P20676	1076 aa		4.52	□□□□□ -1.69
snR56	snR56	TDA9	Q04545	1251 aa		4.52	□□□□□ -1.69
snR56	snR56	OSH2	Q12451	1283 aa		4.52	□□□□□ -1.69
snR56	snR56	CIT1	P00890	479 aa		4.51	□□□□□ -1.69
snR56	snR56	HSP60	P19882	572 aa	Known RBP	4.51	□□□□□ -1.69
snR56	snR56	RPA135	P22138	1203 aa	Known RBP	4.51	□□□□□ -1.69
snR56	snR56	GET2	P40056	285 aa		4.51	□□□□□ -1.69
snR56	snR56	YDL124W	Q07551	312 aa	Known RBP	4.51	□□□□□ -1.69
snR56	snR56	CLF1	Q12309	687 aa	Predicted RBP	4.51	□□□□□ -1.69
snR56	snR56	YMC2	P38087	329 aa		4.5	□□□□□ -1.69
snR56	snR56	CRP1	P38845	465 aa	Known RBP	4.5	□□□□□ -1.69
snR56	snR56	FMP30	Q02883	468 aa		4.5	□□□□□ -1.69
snR56	snR56	STE12	P13574	688 aa		4.49	□□□□□ -1.69
snR56	snR56	APN1	P22936	367 aa		4.49	□□□□□ -1.69
snR56	snR56	KCC4	P25389	1037 aa		4.49	□□□□□ -1.69
snR56	snR56	PER1	P25625	357 aa		4.49	□□□□□ -1.69
snR56	snR56	RGT1	P32862	1170 aa		4.49	□□□□□ -1.69
snR56	snR56	BET3	P36149	193 aa		4.49	□□□□□ -1.69
snR56	snR56	MIT1	P40002	666 aa		4.49	□□□□□ -1.69
snR56	snR56	HMO1	Q03973	246 aa	Known RBP	4.49	□□□□□ -1.69
snR56	snR56	ADE5,7	P07244	802 aa	Known RBP	4.48	□□□□□ -1.69
snR56	snR56	SAT4	P25333	603 aa	Known RBP	4.48	□□□□□ -1.69
snR56	snR56	YMC1	P32331	307 aa		4.48	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms