RNA–Protein interactions for RNA: YOR018W

ROD1, Transcript of Alpha-arrestin involved in ubiquitin-dependent endocytosis, yeast

Gene ROD1, Length 2,514 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROD1	YOR018W	STO1	P34160	861 aa	Known RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	UBP13	P38187	747 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	TVP23	P38962	199 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	SSB2	P40150	613 aa	Known RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	SHQ1	P40486	507 aa	Predicted RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	EMW1	P42842	904 aa	Known RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	FYV8	P46949	817 aa	Known RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	ASG7	P46993	209 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	MNP1	P53163	194 aa	Predicted RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	ERG5	P54781	538 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	DAK1	P54838	584 aa	Known RBP	4.16	□□□□□ -1.74
ROD1	YOR018W	TIM8	P57744	87 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	MSC2	Q03455	724 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	SHS1	Q07657	551 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	SIL1	Q08199	421 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	SMC5	Q08204	1093 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	HMI1	Q12039	706 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	MED1	Q12321	566 aa		4.16	□□□□□ -1.74
ROD1	YOR018W	TCP1	P12612	559 aa	Known RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	MRF1	P30775	413 aa	Predicted RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	SMC1	P32908	1225 aa		4.15	□□□□□ -1.74
ROD1	YOR018W	SET5	P38890	526 aa	Known RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	YMR124W	P39523	943 aa	Known RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	TFG2	P41896	400 aa	Predicted RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	YJR107W	P47145	328 aa		4.15	□□□□□ -1.74
ROD1	YOR018W	DIG1	Q03063	452 aa	Known RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	SNU56	Q03782	492 aa	Known RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	SOV1	Q04748	898 aa		4.15	□□□□□ -1.74
ROD1	YOR018W	CDC53	Q12018	815 aa	Known RBP	4.15	□□□□□ -1.74
ROD1	YOR018W	PCK1	P10963	549 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	RAD57	P25301	460 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	PRR1	P28708	518 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	EFT1	P32324	842 aa	Known RBP	4.15	□□□□□ -1.75
ROD1	YOR018W	TMT1	P32643	299 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	COT1	P32798	439 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	NIP100	P33420	868 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	PPX1	P38698	397 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	CCC2	P38995	1004 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	MXR1	P40029	184 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	HMF1	P40037	129 aa	Known RBP	4.15	□□□□□ -1.75
ROD1	YOR018W	CLA4	P48562	842 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	ASN1	P49089	572 aa	Known RBP	4.15	□□□□□ -1.75
ROD1	YOR018W	MUK1	Q02866	612 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	TRS130	Q03660	1102 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	GYL1	Q04322	720 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	RGA2	Q06407	1009 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	CDD1	Q06549	142 aa		4.15	□□□□□ -1.75
ROD1	YOR018W	MTF2	P10849	440 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	PHO8	P11491	566 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	PET123	P17558	318 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	DAL2	P25335	343 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	RRT12	P25381	491 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	PAP1	P29468	568 aa	Known RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	MET4	P32389	672 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	SEC8	P32855	1065 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	TRZ1	P36159	838 aa	Predicted RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	NUT2	Q06213	157 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	CSR1	Q06705	408 aa	Known RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	TRP2	P00899	507 aa	Known RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	ERG11	P10614	530 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	UBC1	P21734	215 aa	Known RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	CHL1	P22516	861 aa	Predicted RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	SPT16	P32558	1035 aa	Known RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	PEX2	P32800	271 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	GRS1	P38088	690 aa	Known RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
ROD1	YOR018W	VPS62	P53285	467 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	YAF9	P53930	226 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	SEC5	P89102	971 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	GIR2	Q03768	265 aa	Predicted RBP	4.14	□□□□□ -1.75
ROD1	YOR018W	YLR297W	Q05899	129 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	COG4	Q06096	861 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	PUN1	Q06991	263 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	MNL2	Q12205	849 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	LSO1	Q3E827	93 aa		4.14	□□□□□ -1.75
ROD1	YOR018W	HIP1	P06775	603 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	CDC42	P19073	191 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	APL1	P27351	700 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
ROD1	YOR018W	UIP5	P36137	443 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	JNM1	P36224	373 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	AGP2	P38090	596 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	MRX3	P38172	270 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	QDR1	P40475	563 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	CPR7	P47103	393 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	AZR1	P50080	613 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	VID30	P53076	958 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	BOP3	P53958	396 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	VPS38	Q05919	439 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	SRF1	Q12516	437 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	SWI5	P08153	709 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	PAH1	P32567	862 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	EXO5	P38289	585 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	EFM4	P40516	257 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	ICL2	Q12031	575 aa		4.13	□□□□□ -1.75
ROD1	YOR018W	GYP6	P32806	458 aa		4.12	□□□□□ -1.75
ROD1	YOR018W	DRE2	P36152	348 aa		4.12	□□□□□ -1.75
ROD1	YOR018W	CBR1	P38626	284 aa	Known RBP	4.12	□□□□□ -1.75
ROD1	YOR018W	SGM1	P47166	707 aa		4.12	□□□□□ -1.75
ROD1	YOR018W	APT1	P49435	187 aa	Known RBP	4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms