RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PARD6BQ9BYG5 372 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 PHLPP2Q6ZVD8 1323 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 SASH1O94885 1247 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 GJA8P48165 433 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 PKD2Q13563 968 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC73Q6ZRK6 1079 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 TMC6Q7Z403 805 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 RBM33Q96EV2 1170 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 INTS4Q96HW7 963 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 RBM47A0AV96 593 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 ANKRD33BA6NCL7 494 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 AKAP17AQ02040 695 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 NUCB1Q02818 461 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 GRIK3Q13003 919 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 GNPTABQ3T906 1256 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 FOXR1Q6PIV2 292 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CEP128Q6ZU80 1094 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC65Q8IXS2 484 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 RBM12BQ8IXT5 1001 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC12Q8WUD4 166 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CTNNBL1Q8WYA6 563 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 LARP6Q9BRS8 491 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 PAIP2BQ9ULR5 123 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 SMARCA5O60264 1052 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 OPA1O60313 960 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CHMP4BP1P59074 171 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 SNX1Q13596 522 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 REXO1L1PQ8IX06 675 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 SMARCC2Q8TAQ2 1214 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 TATDN2Q93075 761 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CAPS2Q9BXY5 557 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 MAF1Q9H063 256 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 BAIAP2L1Q9UHR4 511 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF232Q9UNY5 417 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 POLA1P09884 1462 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CBFA2T2O43439 604 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 PPP1R12BO60237 982 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 RNF40O75150 1001 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 PAPOLAP51003 745 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 MAP7D1Q3KQU3 841 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC170Q8IYT3 715 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC148Q8NFR7 591 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 ATL2Q8NHH9 583 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 TDRD7Q8NHU6 1098 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 UPF3BQ9BZI7 483 aaKnown RBP6.54□□□□□ -1.36
SCN1A-216ENST00000637968 TSGA10Q9BZW7 698 aa6.54□□□□□ -1.36
SCN1A-216ENST00000637968 SYNJ2O15056 1496 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 SNAPC4Q5SXM2 1469 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PARD3Q8TEW0 1356 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ZSCAN22P10073 491 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 FERP16591 822 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 GNGT1P63211 74 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 C1QTNF12Q5T7M4 302 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 NFATC2IPQ8NCF5 419 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 HOOK2Q96ED9 719 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 DDX27Q96GQ7 796 aaKnown RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 CHAMP1Q96JM3 812 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 TRIM7Q9C029 511 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 MMADHCQ9H3L0 296 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 RABEP2Q9H5N1 569 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 L2HGDHQ9H9P8 463 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ATP6V0A4Q9HBG4 840 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ANO10Q9NW15 660 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 TBC1D2BQ9UPU7 963 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 DNMBPQ6XZF7 1577 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 VIRMAQ69YN4 1812 aaKnown RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 AHCYL1O43865 530 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 WDHD1O75717 1129 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF189O75820 626 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ZFXP17010 805 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 VCAM1P19320 739 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 KCNB1Q14721 858 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 NYAP1Q6ZVC0 841 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 AMOTL1Q8IY63 956 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 LMBR1Q8WVP7 490 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ATRIPQ8WXE1 791 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ALS2CR12Q96Q35 445 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 DNAJC25Q9H1X3 360 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ACTR5Q9H9F9 607 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 IMPACTQ9P2X3 320 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 CTAGE15A4D2H0 777 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 EXOC5O00471 708 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PPFIA3O75145 1194 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PYGLP06737 847 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 CTAGE8P0CG41 777 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 TMED1Q13445 227 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 STX1AQ16623 288 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 MYSM1Q5VVJ2 828 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF280DQ6N043 979 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF365Q70YC5 407 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 CTAGE6Q86UF2 777 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 CTAGE4Q8IX94 777 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PARP9Q8IXQ6 854 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PDILTQ8N807 584 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PPP1R13BQ96KQ4 1090 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 RANBP17Q9H2T7 1088 aaKnown RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 HYPKQ9NX55 129 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 TPX2Q9ULW0 747 aaKnown RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms