RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 PARP3Q9Y6F1 533 aa14.4□□□□□ -0.1
CLN6-223ENST00000637823 ANKRD31Q8N7Z5 1873 aa14.4□□□□□ -0.1
CLN6-223ENST00000637823 MMP10P09238 476 aa14.39□□□□□ -0.11
CLN6-223ENST00000637823 SDSP20132 328 aa14.39□□□□□ -0.11
CLN6-223ENST00000637823 TIMM10P62072 90 aa14.39□□□□□ -0.11
CLN6-223ENST00000637823 RPS8P62241 208 aaKnown RBP14.39□□□□□ -0.11
CLN6-223ENST00000637823 TSHZ3Q63HK5 1081 aa14.39□□□□□ -0.11
CLN6-223ENST00000637823 NEUROD6Q96NK8 337 aa14.39□□□□□ -0.11
CLN6-223ENST00000637823 BSDC1Q9NW68 430 aaPredicted RBP14.39□□□□□ -0.11
CLN6-223ENST00000637823 A0A1B0GUL6 1792 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 A0A1B0GUL7 405 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 KLRG2A4D1S0 409 aaPredicted RBP14.38□□□□□ -0.11
CLN6-223ENST00000637823 CDC45O75419 566 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 PDE8BO95263 885 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 ATP5JP18859 108 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 VGLL2Q8N8G2 317 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 SLC16A10Q8TF71 515 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 BRIP1Q9BX63 1249 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 TLR7Q9NYK1 1049 aaKnown RBP14.38□□□□□ -0.11
CLN6-223ENST00000637823 DBNLQ9UJU6 430 aaKnown RBP14.38□□□□□ -0.11
CLN6-223ENST00000637823 ZNF609O15014 1411 aa14.38□□□□□ -0.11
CLN6-223ENST00000637823 TRIM6-TRIM34B2RNG4 842 aa14.37□□□□□ -0.11
CLN6-223ENST00000637823 EIF5BO60841 1220 aaKnown RBP14.37□□□□□ -0.11
CLN6-223ENST00000637823 ATP2B3Q16720 1220 aa14.37□□□□□ -0.11
CLN6-223ENST00000637823 CRY2Q49AN0 593 aa14.37□□□□□ -0.11
CLN6-223ENST00000637823 MSL1Q68DK7 614 aa14.37□□□□□ -0.11
CLN6-223ENST00000637823 RPGRQ92834 1020 aaKnown RBP14.37□□□□□ -0.11
CLN6-223ENST00000637823 UPF1Q92900 1129 aaKnown RBP eCLIP14.37□□□□□ -0.11
CLN6-223ENST00000637823 DBNDD2Q9BQY9 259 aa14.37□□□□□ -0.11
CLN6-223ENST00000637823 ARAP2Q8WZ64 1704 aa14.36□□□□□ -0.11
CLN6-223ENST00000637823 HOXA10P31260 410 aaPredicted RBP14.36□□□□□ -0.11
CLN6-223ENST00000637823 PUM3Q15397 648 aaKnown RBP14.36□□□□□ -0.11
CLN6-223ENST00000637823 CELF1Q92879 486 aaKnown RBP14.36□□□□□ -0.11
CLN6-223ENST00000637823 RBM17Q96I25 401 aaKnown RBP14.36□□□□□ -0.11
CLN6-223ENST00000637823 COL4A1P02462 1669 aa14.36□□□□□ -0.11
CLN6-223ENST00000637823 FGFR2P21802 821 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 PDE6BP35913 854 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 CHRNDQ07001 517 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 GRAPQ13588 217 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 CCDC158Q5M9N0 1113 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 GORABQ5T7V8 394 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 CASC1Q6TDU7 716 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 TBC1D9Q6ZT07 1266 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 CNTROBQ8N137 903 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 HELBQ8NG08 1087 aaPredicted RBP14.35□□□□□ -0.11
CLN6-223ENST00000637823 GRAPLQ8TC17 118 aaPredicted RBP14.35□□□□□ -0.11
CLN6-223ENST00000637823 LPIN2Q92539 896 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 RILPL2Q969X0 211 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 XAGE2Q96GT9 111 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 CRAMP1Q96RY5 1269 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 MINPP1Q9UNW1 487 aa14.35□□□□□ -0.11
CLN6-223ENST00000637823 SLC5A1P13866 664 aa14.34□□□□□ -0.11
CLN6-223ENST00000637823 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLN6-223ENST00000637823 EVI5LQ96CN4 794 aa14.34□□□□□ -0.11
CLN6-223ENST00000637823 ANKRD2Q9GZV1 360 aa14.34□□□□□ -0.11
CLN6-223ENST00000637823 RBM19Q9Y4C8 960 aaKnown RBP14.34□□□□□ -0.11
CLN6-223ENST00000637823 TAF5LO75529 589 aa14.33□□□□□ -0.12
CLN6-223ENST00000637823 BBOX1O75936 387 aa14.33□□□□□ -0.12
CLN6-223ENST00000637823 BOLA2Q9H3K6 86 aa14.33□□□□□ -0.12
CLN6-223ENST00000637823 AKAP11Q9UKA4 1901 aa14.33□□□□□ -0.12
CLN6-223ENST00000637823 SEC24BO95487 1268 aa14.32□□□□□ -0.12
CLN6-223ENST00000637823 MAP4K4O95819 1239 aaPredicted RBP14.32□□□□□ -0.12
CLN6-223ENST00000637823 IFIT1P09914 478 aaKnown RBP14.32□□□□□ -0.12
CLN6-223ENST00000637823 ADORA1P30542 326 aa14.32□□□□□ -0.12
CLN6-223ENST00000637823 UBE4AQ14139 1066 aa14.32□□□□□ -0.12
CLN6-223ENST00000637823 TTC39AQ5SRH9 613 aa14.32□□□□□ -0.12
CLN6-223ENST00000637823 ZNF512BQ96KM6 892 aaPredicted RBP14.32□□□□□ -0.12
CLN6-223ENST00000637823 HAUS7Q99871 368 aa14.32□□□□□ -0.12
CLN6-223ENST00000637823 PDGFDQ9GZP0 370 aaPredicted RBP14.32□□□□□ -0.12
CLN6-223ENST00000637823 UQCRFS1P1P0C7P4 283 aa14.31□□□□□ -0.12
CLN6-223ENST00000637823 NPR1P16066 1061 aa14.31□□□□□ -0.12
CLN6-223ENST00000637823 CHMLP26374 656 aa14.31□□□□□ -0.12
CLN6-223ENST00000637823 TMC4Q7Z404 712 aa14.31□□□□□ -0.12
CLN6-223ENST00000637823 TICAM2Q86XR7 235 aa14.31□□□□□ -0.12
CLN6-223ENST00000637823 UPF2Q9HAU5 1272 aaKnown RBP14.31□□□□□ -0.12
CLN6-223ENST00000637823 HIP1O00291 1037 aa14.3□□□□□ -0.12
CLN6-223ENST00000637823 SRGNP10124 158 aa14.3□□□□□ -0.12
CLN6-223ENST00000637823 ALDH1B1P30837 517 aa14.3□□□□□ -0.12
CLN6-223ENST00000637823 MYH7P12883 1935 aa14.29□□□□□ -0.12
CLN6-223ENST00000637823 H0YIN7 160 aa14.29□□□□□ -0.12
CLN6-223ENST00000637823 MASTLQ96GX5 879 aa14.29□□□□□ -0.12
CLN6-223ENST00000637823 COL11A2P13942 1736 aaPredicted RBP14.29□□□□□ -0.12
CLN6-223ENST00000637823 CACNA1SQ13698 1873 aa14.29□□□□□ -0.12
CLN6-223ENST00000637823 ARID4AP29374 1257 aaPredicted RBP14.28□□□□□ -0.12
CLN6-223ENST00000637823 KCNJ4P48050 445 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 CCDC102BQ68D86 513 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 STYK1Q6J9G0 422 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 C2CD5Q86YS7 1000 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 SP8Q8IXZ3 490 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 DNAJC2Q99543 621 aaKnown RBP14.28□□□□□ -0.12
CLN6-223ENST00000637823 PAG1Q9NWQ8 432 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 LEMD3Q9Y2U8 911 aa14.28□□□□□ -0.12
CLN6-223ENST00000637823 MYH13Q9UKX3 1938 aa14.27□□□□□ -0.12
CLN6-223ENST00000637823 KIF13BQ9NQT8 1826 aa14.27□□□□□ -0.12
CLN6-223ENST00000637823 LRRC37AA6NMS7 1700 aa14.27□□□□□ -0.12
CLN6-223ENST00000637823 XDHP47989 1333 aa14.27□□□□□ -0.12
CLN6-223ENST00000637823 SNAP23O00161 211 aa14.27□□□□□ -0.13
CLN6-223ENST00000637823 PHKA1P46020 1223 aa14.27□□□□□ -0.13
CLN6-223ENST00000637823 MFAP1P55081 439 aaKnown RBP14.27□□□□□ -0.13
CLN6-223ENST00000637823 RUFY2Q8WXA3 655 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms