RNA–Protein interactions for RNA: ENST00000625926.1

SSBP4-215, Transcript of single stranded DNA binding protein 4, human

TSL 5 BASIC

Gene SSBP4, Length 162 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-215	ENST00000625926	BSDC1	Q9NW68	430 aa	Predicted RBP	13.8	□□□□□ -0.2
SSBP4-215	ENST00000625926	ANKRD36C	Q5JPF3	1778 aa		13.8	□□□□□ -0.2
SSBP4-215	ENST00000625926		F6X3S4	739 aa		13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	ECE2	O60344	883 aa		13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	CASP7	P55210	303 aa		13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	BEND3	Q5T5X7	828 aa		13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	GPR101	Q96P66	508 aa	Predicted RBP	13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	CNOT7	Q9UIV1	285 aa	Known RBP	13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	XDH	P47989	1333 aa		13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	RTL9	Q8NET4	1388 aa		13.79	□□□□□ -0.2
SSBP4-215	ENST00000625926	CACNA1S	Q13698	1873 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	DICER1	Q9UPY3	1922 aa	Known RBP	13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926		E9PSI1	815 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926		H7C1D1	291 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	PSMD14	O00487	310 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	CSF1R	P07333	972 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	ATP2B4	P23634	1241 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	IGHMBP2	P38935	993 aa	Known RBP	13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	DPF2	Q92785	391 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	MKRN1	Q9UHC7	482 aa	Known RBP	13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	MINPP1	Q9UNW1	487 aa		13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.78	□□□□□ -0.2
SSBP4-215	ENST00000625926	CCER2	I3L3R5	266 aa		13.77	□□□□□ -0.21
SSBP4-215	ENST00000625926	ITGA6	P23229	1130 aa		13.77	□□□□□ -0.21
SSBP4-215	ENST00000625926	RPS12	P25398	132 aa	Known RBP	13.77	□□□□□ -0.21
SSBP4-215	ENST00000625926	ZC3H15	Q8WU90	426 aa	Known RBP	13.77	□□□□□ -0.21
SSBP4-215	ENST00000625926	KCNQ5	Q9NR82	932 aa		13.77	□□□□□ -0.21
SSBP4-215	ENST00000625926	DUOX1	Q9NRD9	1551 aa		13.76	□□□□□ -0.21
SSBP4-215	ENST00000625926	MICALL2	Q8IY33	904 aa		13.76	□□□□□ -0.21
SSBP4-215	ENST00000625926	MPHOSPH8	Q99549	860 aa		13.76	□□□□□ -0.21
SSBP4-215	ENST00000625926	PGAP2	Q9UHJ9	254 aa		13.76	□□□□□ -0.21
SSBP4-215	ENST00000625926	CCDC88A	Q3V6T2	1871 aa		13.76	□□□□□ -0.21
SSBP4-215	ENST00000625926	ALDH1L1	O75891	902 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	VIL1	P09327	827 aa	Known RBP	13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	HIRA	P54198	1017 aa	Predicted RBP	13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	SLFN5	Q08AF3	891 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	FAM161A	Q3B820	660 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	SLC4A10	Q6U841	1118 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	PODN	Q7Z5L7	613 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	ANKRD2	Q9GZV1	360 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	SCN4A	P35499	1836 aa		13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	DDX60	Q8IY21	1712 aa	Known RBP	13.75	□□□□□ -0.21
SSBP4-215	ENST00000625926	CNTNAP1	P78357	1384 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	SHTN1	A0MZ66	631 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	ANKRD18B	A2A2Z9	1011 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	GRM8	O00222	908 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	CCT4	P50991	539 aa	Known RBP	13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	FOXO4	P98177	505 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	MRPL50	Q8N5N7	158 aa	Known RBP	13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	TRPM4	Q8TD43	1214 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	SRCIN1	Q9C0H9	1055 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	LEMD3	Q9Y2U8	911 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	COL4A1	P02462	1669 aa		13.74	□□□□□ -0.21
SSBP4-215	ENST00000625926	WTIP	A6NIX2	430 aa	Predicted RBP	13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	RASSF10	A6NK89	507 aa		13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	TRAF5	O00463	557 aa		13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	FMR1	Q06787	632 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	IFIT5	Q13325	482 aa	Known RBP	13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	DEFB115	Q30KQ5	88 aa		13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	CDC37L1	Q7L3B6	337 aa		13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	SAMD7	Q7Z3H4	446 aa		13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	ABT1	Q9ULW3	272 aa	Known RBP	13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	LAMB2	P55268	1798 aa		13.73	□□□□□ -0.21
SSBP4-215	ENST00000625926	VEGFB	P49765	207 aa		13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	RBM26	Q5T8P6	1007 aa	Known RBP	13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	CST9	Q5W186	159 aa		13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	LMBR1L	Q6UX01	489 aa		13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	AGBL3	Q8NEM8	1001 aa		13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	CDCA7L	Q96GN5	454 aa		13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	CHMP3	Q9Y3E7	222 aa		13.72	□□□□□ -0.21
SSBP4-215	ENST00000625926	MED23	Q9ULK4	1368 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	ZNF804B	A4D1E1	1349 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	PTPRC	P08575	1304 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	LRRC37A	A6NMS7	1700 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	LTBP1	Q14766	1721 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	USP17L3	A6NCW0	530 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	USP17L4	A6NCW7	530 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	HSPA1A	P0DMV8	641 aa	Known RBP	13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	HSPA1B	P0DMV9	641 aa	Known RBP	13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	CHRND	Q07001	517 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	CCDC57	Q2TAC2	916 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	EPHA10	Q5JZY3	1008 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	USP17L1	Q7RTZ2	530 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	SSH1	Q8WYL5	1049 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	COA1	Q9GZY4	146 aa		13.71	□□□□□ -0.21
SSBP4-215	ENST00000625926	ADAMTSL1	Q8N6G6	1762 aa		13.71	□□□□□ -0.22
SSBP4-215	ENST00000625926	CELF2	O95319	508 aa	Known RBP	13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	EGFR	P00533	1210 aa		13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	KCNJ4	P48050	445 aa		13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	ALDH1L2	Q3SY69	923 aa		13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	USP48	Q86UV5	1035 aa		13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	TRMT2A	Q8IZ69	625 aa	Known RBP	13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	DCPS	Q96C86	337 aa	Known RBP	13.7	□□□□□ -0.22
SSBP4-215	ENST00000625926	USP17L8	P0C7I0	530 aa		13.69	□□□□□ -0.22
SSBP4-215	ENST00000625926	ZNF280A	P59817	542 aa	Predicted RBP	13.69	□□□□□ -0.22
SSBP4-215	ENST00000625926	KIF4B	Q2VIQ3	1234 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms