RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 GOLGA6L19H0YKK7 550 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 POLR3DP05423 398 aaPredicted RBP16.57■□□□□ 0.24
COL6A1-207ENST00000612273 MAP7D2Q96T17 732 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 BECN2A8MW95 431 aa16.56■□□□□ 0.24
COL6A1-207ENST00000612273 HMGN5P82970 282 aaKnown RBP16.56■□□□□ 0.24
COL6A1-207ENST00000612273 GTF3C6Q969F1 213 aa16.56■□□□□ 0.24
COL6A1-207ENST00000612273 PROSER2Q86WR7 435 aaPredicted RBP16.56■□□□□ 0.24
COL6A1-207ENST00000612273 SLC52A2Q9HAB3 445 aa16.56■□□□□ 0.24
COL6A1-207ENST00000612273 BIN1O00499 593 aa16.55■□□□□ 0.24
COL6A1-207ENST00000612273 CCDC144BQ3MJ40 725 aa16.55■□□□□ 0.24
COL6A1-207ENST00000612273 C11orf57Q6ZUT1 292 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-207ENST00000612273 CCAR1Q8IX12 1150 aaKnown RBP16.55■□□□□ 0.24
COL6A1-207ENST00000612273 CCDC144CPQ8IYA2 1237 aa16.55■□□□□ 0.24
COL6A1-207ENST00000612273 TATP17735 454 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-207ENST00000612273 TPD52L1Q16890 204 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-207ENST00000612273 MCMDC2Q4G0Z9 681 aa16.55■□□□□ 0.24
COL6A1-207ENST00000612273 PRIMPOLQ96LW4 560 aa16.55■□□□□ 0.24
COL6A1-207ENST00000612273 NPHP4O75161 1426 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-207ENST00000612273 U2AF2P26368 475 aaKnown RBP eCLIP16.55■□□□□ 0.24
COL6A1-207ENST00000612273 WASHC4Q2M389 1173 aa16.55■□□□□ 0.24
COL6A1-207ENST00000612273 PTPDC1A2A3K4 754 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 LRRC24Q50LG9 513 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 TTLL7Q6ZT98 887 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 STK11IPQ8N1F8 1099 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 CACTINQ8WUQ7 758 aaKnown RBP16.54■□□□□ 0.24
COL6A1-207ENST00000612273 USP28Q96RU2 1077 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 GORABQ5T7V8 394 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 KCNB2Q92953 911 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 CLSTN2Q9H4D0 955 aa16.54■□□□□ 0.24
COL6A1-207ENST00000612273 TNNT1P13805 278 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 CABP4P57796 275 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 ATP2B3Q16720 1220 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 DDX19AQ9NUU7 478 aaKnown RBP16.53■□□□□ 0.24
COL6A1-207ENST00000612273 A1BGP04217 495 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 PUS3Q9BZE2 481 aaKnown RBP16.53■□□□□ 0.24
COL6A1-207ENST00000612273 ATP5JP18859 108 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 ZNF75DP51815 510 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 RESTQ13127 1097 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 PDCL2Q8N4E4 241 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 SDF4Q9BRK5 362 aa16.53■□□□□ 0.24
COL6A1-207ENST00000612273 ZNF609O15014 1411 aa16.52■□□□□ 0.24
COL6A1-207ENST00000612273 MED23Q9ULK4 1368 aa16.52■□□□□ 0.24
COL6A1-207ENST00000612273 A0A1B0GVL5 298 aa16.52■□□□□ 0.24
COL6A1-207ENST00000612273 GOLPH3LQ9H4A5 285 aa16.52■□□□□ 0.24
COL6A1-207ENST00000612273 HMG20BQ9P0W2 317 aa16.52■□□□□ 0.24
COL6A1-207ENST00000612273 SNRPA1P09661 255 aaKnown RBP16.52■□□□□ 0.23
COL6A1-207ENST00000612273 ZSCAN25Q6NSZ9 544 aa16.52■□□□□ 0.23
COL6A1-207ENST00000612273 SPTLC3Q9NUV7 552 aa16.52■□□□□ 0.23
COL6A1-207ENST00000612273 PHKG2P15735 406 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 SF3A1Q15459 793 aaKnown RBP16.51■□□□□ 0.23
COL6A1-207ENST00000612273 PTPN21Q16825 1174 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 PI16Q6UXB8 463 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 CCDC73Q6ZRK6 1079 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 FSIP1Q8NA03 581 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 ERBB3P21860 1342 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 ANKARQ7Z5J8 1434 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 RXRAP19793 462 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 KRT32Q14532 448 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 U3KPZ7 1027 aaPredicted RBP16.51■□□□□ 0.23
COL6A1-207ENST00000612273 USP27XA6NNY8 438 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 KINO60870 393 aaKnown RBP16.51■□□□□ 0.23
COL6A1-207ENST00000612273 CCDC94Q9BW85 323 aaPredicted RBP16.51■□□□□ 0.23
COL6A1-207ENST00000612273 PAG1Q9NWQ8 432 aa16.51■□□□□ 0.23
COL6A1-207ENST00000612273 CYP27B1O15528 508 aa16.5■□□□□ 0.23
COL6A1-207ENST00000612273 RFX5P48382 616 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-207ENST00000612273 COPRSQ9NQ92 184 aa16.5■□□□□ 0.23
COL6A1-207ENST00000612273 IFIT1P09914 478 aaKnown RBP16.5■□□□□ 0.23
COL6A1-207ENST00000612273 NSUN7Q8NE18 718 aaKnown RBP16.5■□□□□ 0.23
COL6A1-207ENST00000612273 CTDNEP1O95476 244 aa16.5■□□□□ 0.23
COL6A1-207ENST00000612273 CFAP45Q9UL16 551 aa16.5■□□□□ 0.23
COL6A1-207ENST00000612273 AOPEPQ8N6M6 819 aa16.49■□□□□ 0.23
COL6A1-207ENST00000612273 TUBGCP6Q96RT7 1819 aa16.49■□□□□ 0.23
COL6A1-207ENST00000612273 DHX32Q7L7V1 743 aaKnown RBP16.49■□□□□ 0.23
COL6A1-207ENST00000612273 IFNL2Q8IZJ0 200 aa16.49■□□□□ 0.23
COL6A1-207ENST00000612273 KBTBD3Q8NAB2 608 aa16.49■□□□□ 0.23
COL6A1-207ENST00000612273 ELP1O95163 1332 aa16.49■□□□□ 0.23
COL6A1-207ENST00000612273 RGPD2P0DJD1 1756 aa16.49■□□□□ 0.23
COL6A1-207ENST00000612273 ZRSR1Q15695 479 aaKnown RBP16.48■□□□□ 0.23
COL6A1-207ENST00000612273 LRRC37A3O60309 1634 aa16.48■□□□□ 0.23
COL6A1-207ENST00000612273 HAUS7Q99871 368 aa16.48■□□□□ 0.23
COL6A1-207ENST00000612273 E7EWF7 191 aa16.48■□□□□ 0.23
COL6A1-207ENST00000612273 HSPD1P10809 573 aaKnown RBP16.48■□□□□ 0.23
COL6A1-207ENST00000612273 MTERF4Q7Z6M4 381 aaKnown RBP16.48■□□□□ 0.23
COL6A1-207ENST00000612273 A0A0G2JS52 829 aa16.47■□□□□ 0.23
COL6A1-207ENST00000612273 HSP90AA4PQ58FG1 418 aa16.47■□□□□ 0.23
COL6A1-207ENST00000612273 A0A1B0GUL7 405 aa16.47■□□□□ 0.23
COL6A1-207ENST00000612273 UTYO14607 1347 aa16.46■□□□□ 0.23
COL6A1-207ENST00000612273 ADORA1P30542 326 aa16.46■□□□□ 0.23
COL6A1-207ENST00000612273 DENND2AQ9ULE3 1009 aa16.46■□□□□ 0.23
COL6A1-207ENST00000612273 SKILP12757 684 aa16.46■□□□□ 0.23
COL6A1-207ENST00000612273 MARCKSP29966 332 aaPredicted RBP16.46■□□□□ 0.23
COL6A1-207ENST00000612273 TAF7LQ5H9L4 462 aa16.46■□□□□ 0.23
COL6A1-207ENST00000612273 SYNE4Q8N205 404 aa16.46■□□□□ 0.23
COL6A1-207ENST00000612273 NBPF26B4DH59 902 aa16.46■□□□□ 0.22
COL6A1-207ENST00000612273 SMC2O95347 1197 aa16.46■□□□□ 0.22
COL6A1-207ENST00000612273 NBPF14Q5TI25 921 aa16.46■□□□□ 0.22
COL6A1-207ENST00000612273 NBPF10Q6P3W6 841 aaKnown RBP16.46■□□□□ 0.22
COL6A1-207ENST00000612273 NBPF15Q8N660 670 aa16.46■□□□□ 0.22
COL6A1-207ENST00000612273 M0R2C6 588 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 APPP05067 770 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms