RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 ZNF417Q8TAU3 575 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 ZNF587Q96SQ5 575 aaPredicted RBP3□□□□□ -1.93
SMCHD1-211ENST00000584897 HRH3Q9Y5N1 445 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 DCDC2BA2VCK2 349 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 C3P01024 1663 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 EHHADHQ08426 723 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 GAS6Q14393 721 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 POGZQ7Z3K3 1410 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 RAPGEF6Q8TEU7 1601 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 MRPL18Q9H0U6 180 aaKnown RBP3□□□□□ -1.93
SMCHD1-211ENST00000584897 POLR1AO95602 1720 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 FAM196BA6NMK8 535 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 NRLP54845 237 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 FGD1P98174 961 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 ECM1Q16610 540 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 PLA2G4EQ3MJ16 856 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 RNFT1Q5M7Z0 435 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 FAM9AQ8IZU1 332 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 SCG3Q8WXD2 468 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 KDM5CP41229 1560 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 PPP1R15AO75807 674 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 CTBSQ01459 385 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 BHMTQ93088 406 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 USP5P45974 858 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 TXNRD3Q86VQ6 643 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 SERBP1Q8NC51 408 aaKnown RBP eCLIP2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 COL26A1Q96A83 441 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 NDFIP2Q9NV92 336 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 HCN4Q9Y3Q4 1203 aa2.99□□□□□ -1.93
SMCHD1-211ENST00000584897 EML1O00423 815 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 SCTRP47872 440 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 TMCO4Q5TGY1 634 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 WNT8BQ93098 351 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 SUSD3Q96L08 255 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 SPOCK3Q9BQ16 436 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 SEMA6BQ9H3T3 888 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 PCDHGA11Q9Y5H2 935 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 FHOD3Q2V2M9 1422 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 PTPRAP18433 802 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 CD33P20138 364 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 ZMYM1Q5SVZ6 1142 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 WHAMMQ8TF30 809 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 TCOF1Q13428 1488 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 UACAQ9BZF9 1416 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 POM121CA8CG34 1229 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 RARAP10276 462 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 NGLY1Q96IV0 654 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 IGFLR1Q9H665 355 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 PTPRKQ15262 1439 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 TNIKQ9UKE5 1360 aa2.98□□□□□ -1.93
SMCHD1-211ENST00000584897 KRT76Q01546 638 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 IGF2-ASQ6U949 168 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 ALDH16A1Q8IZ83 802 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 JPH1Q9HDC5 661 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 AGLP35573 1532 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 ADAM23O75077 832 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 CDC27P30260 824 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 MYO19Q96H55 970 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 ZFP64Q9NPA5 681 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 SLC6A14Q9UN76 642 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 UHRF1BP1Q6BDS2 1440 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 GAS2O43903 313 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 LMOD1P29536 600 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 SCNN1DP51172 638 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 CPSF6Q16630 551 aaKnown RBP eCLIP2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 UVSSAQ2YD98 709 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 BTLAQ7Z6A9 289 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 LENG1Q96BZ8 264 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 ATG3Q9NT62 314 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 CUEDC1Q9NWM3 386 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 ABCA8O94911 1581 aa2.97□□□□□ -1.93
SMCHD1-211ENST00000584897 M0R082 166 aa2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 PCBP4P57723 403 aaKnown RBP2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 TNS4Q8IZW8 715 aa2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 KDF1Q8NAX2 398 aaPredicted RBP2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 KLHL23Q8NBE8 558 aa2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 IFT43Q96FT9 208 aa2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 OSGEPQ9NPF4 335 aa2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 HIF3AQ9Y2N7 669 aa2.96□□□□□ -1.93
SMCHD1-211ENST00000584897 NPATQ14207 1427 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 CD109Q6YHK3 1445 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 UGGT2Q9NYU1 1516 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 DHX15O43143 795 aaKnown RBP2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 NLRP13Q86W25 1043 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 DNAJB12Q9NXW2 375 aaKnown RBP2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 WRNQ14191 1432 aaPredicted RBP eCLIP2.96□□□□□ -1.941e-10■■■■■ 128
SMCHD1-211ENST00000584897 ZFYVE16Q7Z3T8 1539 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 DEPDC5O75140 1603 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 KIF14Q15058 1648 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 C1QTNF9BB2RNN3 333 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 TMEM229AB2RXF0 380 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 EFSO43281 561 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 SCNN1AP37088 669 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 GPLD1P80108 840 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 AAMPQ13685 434 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 FBXO11Q86XK2 927 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 RGS17Q9UGC6 210 aaPredicted RBP2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 VWDEQ8N2E2 1590 aa2.96□□□□□ -1.94
SMCHD1-211ENST00000584897 IDH3AP50213 366 aa2.95□□□□□ -1.94
SMCHD1-211ENST00000584897 ELOAQ14241 798 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms