RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ST5P78524 1137 aa9.7□□□□□ -0.86
NUP88-205ENST00000572809 HLFQ16534 295 aa9.7□□□□□ -0.86
NUP88-205ENST00000572809 TSR1Q2NL82 804 aaKnown RBP9.7□□□□□ -0.86
NUP88-205ENST00000572809 TPTE2Q6XPS3 522 aa9.7□□□□□ -0.86
NUP88-205ENST00000572809 CNBD1Q8NA66 436 aa9.7□□□□□ -0.86
NUP88-205ENST00000572809 ZNF622Q969S3 477 aaKnown RBP eCLIP9.7□□□□□ -0.86
NUP88-205ENST00000572809 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.7□□□□□ -0.86
NUP88-205ENST00000572809 NIP7Q9Y221 180 aaKnown RBP eCLIP9.7□□□□□ -0.86
NUP88-205ENST00000572809 NRXN2Q9P2S2 1712 aa9.7□□□□□ -0.86
NUP88-205ENST00000572809 MAP3K7O43318 606 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 ANP32CO43423 234 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 OSBPP22059 807 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 CCDC184Q52MB2 194 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 KIF6Q6ZMV9 814 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 TTLL7Q6ZT98 887 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 KDM3BQ7LBC6 1761 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 NBPF5PQ86XG9 351 aaPredicted RBP9.69□□□□□ -0.86
NUP88-205ENST00000572809 ZNF516Q92618 1163 aa9.69□□□□□ -0.86
NUP88-205ENST00000572809 GPBP1L1Q9HC44 474 aaPredicted RBP9.69□□□□□ -0.86
NUP88-205ENST00000572809 GOLGB1Q14789 3259 aaKnown RBP9.68□□□□□ -0.86
NUP88-205ENST00000572809 ATP10DQ9P241 1426 aa9.68□□□□□ -0.86
NUP88-205ENST00000572809 ERBB4Q15303 1308 aa9.68□□□□□ -0.86
NUP88-205ENST00000572809 MAP3K15Q6ZN16 1313 aa9.68□□□□□ -0.86
NUP88-205ENST00000572809 FAM177BA6PVY3 158 aa9.68□□□□□ -0.86
NUP88-205ENST00000572809 TRIM66O15016 1216 aa9.68□□□□□ -0.86
NUP88-205ENST00000572809 GTF2E1P29083 439 aaPredicted RBP9.68□□□□□ -0.86
NUP88-205ENST00000572809 C1QTNF8P60827 252 aa9.68□□□□□ -0.86
NUP88-205ENST00000572809 ZNF526Q8TF50 670 aaPredicted RBP9.68□□□□□ -0.86
NUP88-205ENST00000572809 ADCY9O60503 1353 aa9.67□□□□□ -0.86
NUP88-205ENST00000572809 C9orf131Q5VYM1 1079 aa9.67□□□□□ -0.86
NUP88-205ENST00000572809 NECTIN2Q92692 538 aa9.67□□□□□ -0.86
NUP88-205ENST00000572809 ZBTB3Q9H5J0 574 aa9.67□□□□□ -0.86
NUP88-205ENST00000572809 BRCA1P38398 1863 aaKnown RBP9.67□□□□□ -0.86
NUP88-205ENST00000572809 SCN7AQ01118 1682 aa9.67□□□□□ -0.86
NUP88-205ENST00000572809 ANXA1P04083 346 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 SRGNP10124 158 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 CALD1Q05682 793 aaKnown RBP9.66□□□□□ -0.86
NUP88-205ENST00000572809 HIC1Q14526 733 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 KRT24Q2M2I5 525 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 STYK1Q6J9G0 422 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 GIGYF2Q6Y7W6 1299 aaKnown RBP9.66□□□□□ -0.86
NUP88-205ENST00000572809 COPS6Q7L5N1 327 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 LRP10Q7Z4F1 713 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 CNKSR1Q969H4 720 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 ZNF775Q96BV0 537 aaPredicted RBP9.66□□□□□ -0.86
NUP88-205ENST00000572809 MASTLQ96GX5 879 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 NYXQ9GZU5 481 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 RNF181Q9P0P0 153 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 ARFGEF1Q9Y6D6 1849 aa9.66□□□□□ -0.86
NUP88-205ENST00000572809 LAMB4A4D0S4 1761 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 BCORQ6W2J9 1755 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 KLRG2A4D1S0 409 aaPredicted RBP9.65□□□□□ -0.86
NUP88-205ENST00000572809 C21orf2O43822 256 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 ZNF853P0CG23 659 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 NPR1P16066 1061 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 GPTP24298 496 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 GNAI1P63096 354 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 PDE4DQ08499 809 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 AIMP1Q12904 312 aaKnown RBP9.65□□□□□ -0.86
NUP88-205ENST00000572809 PROSER3Q2NL68 480 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 ZNF34Q8IZ26 560 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 CDCA7LQ96GN5 454 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 MRS2Q9HD23 443 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 DDX21Q9NR30 783 aaKnown RBP eCLIP9.65□□□□□ -0.86
NUP88-205ENST00000572809 MBIPQ9NS73 344 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 FAM198AQ9UFP1 575 aa9.65□□□□□ -0.86
NUP88-205ENST00000572809 HOXB7P09629 217 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 LMNB1P20700 586 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 ALDH1B1P30837 517 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 RASSF7Q02833 373 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 HDGFL1Q5TGJ6 251 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 SUSD4Q5VX71 490 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 DUSP27Q5VZP5 1158 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 PPP1R42Q7Z4L9 355 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 NUTM1Q86Y26 1132 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 XAGE3Q8WTP9 111 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 IFT57Q9NWB7 429 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 ANKRD31Q8N7Z5 1873 aa9.64□□□□□ -0.87
NUP88-205ENST00000572809 C3orf80F5H4A9 247 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 ELL2O00472 640 aaPredicted RBP9.63□□□□□ -0.87
NUP88-205ENST00000572809 IRF6O14896 467 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 GPR37O15354 613 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 PRELPP51888 382 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 MAP2K5Q13163 448 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 ERFEQ4G0M1 354 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 PARP10Q53GL7 1025 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 PRPF40BQ6NWY9 871 aaKnown RBP9.63□□□□□ -0.87
NUP88-205ENST00000572809 NKX2-3Q8TAU0 364 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 CHPF2Q9P2E5 772 aa9.63□□□□□ -0.87
NUP88-205ENST00000572809 DBF4Q9UBU7 674 aaPredicted RBP9.63□□□□□ -0.87
NUP88-205ENST00000572809 UBN2Q6ZU65 1347 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 NUP98P52948 1817 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 SENP3-EIF4A1A0A087X0R7 540 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 NFKBIEO00221 500 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 RNF40O75150 1001 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 PRSS12P56730 875 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 CCDC27Q2M243 656 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 HSP90AB3PQ58FF7 597 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 SOGA3Q5TF21 947 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 C7orf43Q8WVR3 580 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms