RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PHTF2Q8N3S3 785 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 NFATC2IPQ8NCF5 419 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 IFT57Q9NWB7 429 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 CHIC2Q9UKJ5 165 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 COL4A3BPQ9Y5P4 624 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 MED14O60244 1454 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 REREQ9P2R6 1566 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 FIGNL2A6NMB9 653 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 TTLL8A6PVC2 850 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 USP17L5A8MUK1 530 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 UPP2O95045 317 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 NEFLP07196 543 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 VARSP26640 1264 aaKnown RBP4.09□□□□□ -1.75
VPS35-209ENST00000568642 GTF2F1P35269 517 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS35-209ENST00000568642 FMR1Q06787 632 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS35-209ENST00000568642 FAM50AQ14320 339 aaKnown RBP4.09□□□□□ -1.75
VPS35-209ENST00000568642 GAS6Q14393 721 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 DSC3Q14574 896 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 RALBP1Q15311 655 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 SLFNL1Q499Z3 407 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 CAPN12Q6ZSI9 719 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 PODNQ7Z5L7 613 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 ANKLE2Q86XL3 938 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 RGL4Q8IZJ4 473 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 JMYQ8N9B5 988 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 BAP1Q92560 729 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 FAM161BQ96MY7 647 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 KRTAP4-2Q9BYR5 136 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 SPON1Q9HCB6 807 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 ANO2Q9NQ90 1003 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 ENAMQ9NRM1 1142 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 BIN2Q9UBW5 565 aaPredicted RBP4.09□□□□□ -1.75
VPS35-209ENST00000568642 DCTN4Q9UJW0 460 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 TRPC5Q9UL62 973 aaPredicted RBP4.09□□□□□ -1.75
VPS35-209ENST00000568642 PRR12Q9ULL5 1215 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 THRAP3Q9Y2W1 955 aaKnown RBP4.09□□□□□ -1.75
VPS35-209ENST00000568642 LAS1LQ9Y4W2 734 aaKnown RBP4.09□□□□□ -1.75
VPS35-209ENST00000568642 USP19O94966 1318 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 DIP2AQ14689 1571 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 NRKQ7Z2Y5 1582 aa4.09□□□□□ -1.75
VPS35-209ENST00000568642 AHDC1Q5TGY3 1603 aaPredicted RBP4.09□□□□□ -1.76
VPS35-209ENST00000568642 MYOM1P52179 1685 aa4.09□□□□□ -1.76
VPS35-209ENST00000568642 CFAP99D6REC4 459 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ENPP3O14638 875 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ZBTB7BO15156 539 aaPredicted RBP4.08□□□□□ -1.76
VPS35-209ENST00000568642 CREB3O43889 395 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 FGRP09769 529 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ATP2B1P20020 1258 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ABCC1P33527 1531 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 TBX4P57082 545 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 RHBDL3P58872 404 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 RACK1P63244 317 aaKnown RBP4.08□□□□□ -1.76
VPS35-209ENST00000568642 FOXD4Q12950 439 aaPredicted RBP4.08□□□□□ -1.76
VPS35-209ENST00000568642 WRNQ14191 1432 aaPredicted RBP eCLIP4.08□□□□□ -1.76
VPS35-209ENST00000568642 ZMYM3Q14202 1370 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 C4orf46Q504U0 113 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 EAPPQ56P03 285 aaPredicted RBP4.08□□□□□ -1.76
VPS35-209ENST00000568642 MCF2L2Q86YR7 1114 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ANKMY2Q8IV38 441 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 SULF1Q8IWU6 871 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 DEPDC4Q8N2C3 294 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 KRTAP4-9Q9BYQ8 210 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 UBA5Q9GZZ9 404 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 UNC93B1Q9H1C4 597 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ZSWIM4Q9H7M6 989 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 METTL5Q9NRN9 209 aaKnown RBP4.08□□□□□ -1.76
VPS35-209ENST00000568642 DDX56Q9NY93 547 aaKnown RBP4.08□□□□□ -1.76
VPS35-209ENST00000568642 DIP2CQ9Y2E4 1556 aa4.08□□□□□ -1.76
VPS35-209ENST00000568642 ARID1BQ8NFD5 2236 aaPredicted RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 ARHGAP23Q9P227 1491 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 H3BRB1 525 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 EIF3JO75822 258 aaKnown RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 VIL1P09327 827 aaKnown RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 PAX3P23760 479 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 CLDN10P78369 228 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 SWI5Q1ZZU3 235 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 RAVER1Q8IY67 606 aaKnown RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 ZNF511Q8NB15 262 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 KLRG1Q96E93 195 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 RNPC3Q96LT9 517 aaKnown RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 OSBPL2Q9H1P3 480 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 TUT1Q9H6E5 874 aaKnown RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 CAPN10Q9HC96 672 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 SRA1Q9HD15 236 aaKnown RBP4.07□□□□□ -1.76
VPS35-209ENST00000568642 SEPT3Q9UH03 358 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 USP21Q9UK80 565 aa4.07□□□□□ -1.76
VPS35-209ENST00000568642 BIVM-ERCC5R4GMW8 1640 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 MAP3K1Q13233 1512 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 PER1O15534 1290 aaPredicted RBP4.06□□□□□ -1.76
VPS35-209ENST00000568642 TREHO43280 583 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 KCNQ2O43526 872 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 C21orf2O43822 256 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 FBXO45P0C2W1 286 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 XRCC5P13010 732 aaKnown RBP4.06□□□□□ -1.76
VPS35-209ENST00000568642 NPR3P17342 541 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 COL8A1P27658 744 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 MAPK1P28482 360 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 SETQ01105 290 aaPredicted RBP4.06□□□□□ -1.76
VPS35-209ENST00000568642 SEMA3FQ13275 785 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 MTMR3Q13615 1198 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms