RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 COL4A1P02462 1669 aa26.4■■□□□ 1.82
CLN3-219ENST00000565778 JMYQ8N9B5 988 aa26.39■■□□□ 1.82
CLN3-219ENST00000565778 DUOX1Q9NRD9 1551 aa26.37■■□□□ 1.81
CLN3-219ENST00000565778 LRRC37AA6NMS7 1700 aa26.37■■□□□ 1.81
CLN3-219ENST00000565778 TMEM88BA6NKF7 163 aa26.37■■□□□ 1.81
CLN3-219ENST00000565778 ECE2O60344 883 aa26.37■■□□□ 1.81
CLN3-219ENST00000565778 BSDC1Q9NW68 430 aaPredicted RBP26.37■■□□□ 1.81
CLN3-219ENST00000565778 CNOT7Q9UIV1 285 aaKnown RBP26.37■■□□□ 1.81
CLN3-219ENST00000565778 E9PSI1 815 aa26.36■■□□□ 1.81
CLN3-219ENST00000565778 CASP7P55210 303 aa26.36■■□□□ 1.81
CLN3-219ENST00000565778 BEND3Q5T5X7 828 aa26.36■■□□□ 1.81
CLN3-219ENST00000565778 PLA2G12BQ9BX93 195 aa26.36■■□□□ 1.81
CLN3-219ENST00000565778 ZBTB12Q9Y330 459 aaPredicted RBP26.36■■□□□ 1.81
CLN3-219ENST00000565778 XDHP47989 1333 aa26.36■■□□□ 1.81
CLN3-219ENST00000565778 H7C1D1 291 aa26.35■■□□□ 1.81
CLN3-219ENST00000565778 PSMD14O00487 310 aa26.35■■□□□ 1.81
CLN3-219ENST00000565778 ATP2B4P23634 1241 aa26.35■■□□□ 1.81
CLN3-219ENST00000565778 IGHMBP2P38935 993 aaKnown RBP26.35■■□□□ 1.81
CLN3-219ENST00000565778 KCNQ5Q9NR82 932 aa26.35■■□□□ 1.81
CLN3-219ENST00000565778 MKRN1Q9UHC7 482 aaKnown RBP26.35■■□□□ 1.81
CLN3-219ENST00000565778 MINPP1Q9UNW1 487 aa26.35■■□□□ 1.81
CLN3-219ENST00000565778 LTBP1Q14766 1721 aa26.34■■□□□ 1.81
CLN3-219ENST00000565778 CCER2I3L3R5 266 aa26.34■■□□□ 1.81
CLN3-219ENST00000565778 SLC4A10Q6U841 1118 aa26.34■■□□□ 1.81
CLN3-219ENST00000565778 RTL9Q8NET4 1388 aa26.33■■□□□ 1.81
CLN3-219ENST00000565778 CACNA1FO60840 1977 aa26.33■■□□□ 1.81
CLN3-219ENST00000565778 CSF1RP07333 972 aa26.33■■□□□ 1.81
CLN3-219ENST00000565778 ITGA6P23229 1130 aa26.33■■□□□ 1.81
CLN3-219ENST00000565778 DPF2Q92785 391 aa26.33■■□□□ 1.81
CLN3-219ENST00000565778 ADAMTSL1Q8N6G6 1762 aa26.31■■□□□ 1.8
CLN3-219ENST00000565778 SLFN5Q08AF3 891 aa26.31■■□□□ 1.8
CLN3-219ENST00000565778 MICALL2Q8IY33 904 aa26.31■■□□□ 1.8
CLN3-219ENST00000565778 MPHOSPH8Q99549 860 aa26.31■■□□□ 1.8
CLN3-219ENST00000565778 SHTN1A0MZ66 631 aa26.3■■□□□ 1.8
CLN3-219ENST00000565778 FAM161AQ3B820 660 aa26.3■■□□□ 1.8
CLN3-219ENST00000565778 C9orf78Q9NZ63 289 aaPredicted RBP26.3■■□□□ 1.8
CLN3-219ENST00000565778 ANKRD18BA2A2Z9 1011 aa26.29■■□□□ 1.8
CLN3-219ENST00000565778 WTIPA6NIX2 430 aaPredicted RBP26.29■■□□□ 1.8
CLN3-219ENST00000565778 RPS12P25398 132 aaKnown RBP26.29■■□□□ 1.8
CLN3-219ENST00000565778 HIRAP54198 1017 aaPredicted RBP26.29■■□□□ 1.8
CLN3-219ENST00000565778 FMR1Q06787 632 aaKnown RBP eCLIP26.29■■□□□ 1.8
CLN3-219ENST00000565778 CDCA7LQ96GN5 454 aa26.29■■□□□ 1.8
CLN3-219ENST00000565778 SRCIN1Q9C0H9 1055 aa26.29■■□□□ 1.8
CLN3-219ENST00000565778 CHMP3Q9Y3E7 222 aa26.29■■□□□ 1.8
CLN3-219ENST00000565778 GRM8O00222 908 aa26.28■■□□□ 1.8
CLN3-219ENST00000565778 VIL1P09327 827 aaKnown RBP26.28■■□□□ 1.8
CLN3-219ENST00000565778 CCT4P50991 539 aaKnown RBP26.28■■□□□ 1.8
CLN3-219ENST00000565778 FOXO4P98177 505 aa26.28■■□□□ 1.8
CLN3-219ENST00000565778 MRPL50Q8N5N7 158 aaKnown RBP26.28■■□□□ 1.8
CLN3-219ENST00000565778 ZC3H15Q8WU90 426 aaKnown RBP26.28■■□□□ 1.8
CLN3-219ENST00000565778 TRAF5O00463 557 aa26.27■■□□□ 1.8
CLN3-219ENST00000565778 ALDH1L1O75891 902 aa26.27■■□□□ 1.8
CLN3-219ENST00000565778 IFIT5Q13325 482 aaKnown RBP26.27■■□□□ 1.8
CLN3-219ENST00000565778 RBM26Q5T8P6 1007 aaKnown RBP26.27■■□□□ 1.8
CLN3-219ENST00000565778 SAMD7Q7Z3H4 446 aa26.27■■□□□ 1.8
CLN3-219ENST00000565778 TRPM4Q8TD43 1214 aa26.27■■□□□ 1.8
CLN3-219ENST00000565778 PGAP2Q9UHJ9 254 aa26.27■■□□□ 1.8
CLN3-219ENST00000565778 ANKRD2Q9GZV1 360 aa26.26■■□□□ 1.79
CLN3-219ENST00000565778 ABT1Q9ULW3 272 aaKnown RBP26.26■■□□□ 1.79
CLN3-219ENST00000565778 LEMD3Q9Y2U8 911 aa26.26■■□□□ 1.79
CLN3-219ENST00000565778 CNTNAP1P78357 1384 aa26.25■■□□□ 1.79
CLN3-219ENST00000565778 DEFB115Q30KQ5 88 aa26.25■■□□□ 1.79
CLN3-219ENST00000565778 TBC1D10BQ4KMP7 808 aaPredicted RBP26.25■■□□□ 1.79
CLN3-219ENST00000565778 LMBR1LQ6UX01 489 aa26.25■■□□□ 1.79
CLN3-219ENST00000565778 PODNQ7Z5L7 613 aa26.25■■□□□ 1.79
CLN3-219ENST00000565778 SSH1Q8WYL5 1049 aa26.24■■□□□ 1.79
CLN3-219ENST00000565778 MYH3P11055 1940 aa26.24■■□□□ 1.79
CLN3-219ENST00000565778 CDC37L1Q7L3B6 337 aa26.23■■□□□ 1.79
CLN3-219ENST00000565778 GLIS2Q9BZE0 524 aaPredicted RBP26.23■■□□□ 1.79
CLN3-219ENST00000565778 USP17L3A6NCW0 530 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 USP17L4A6NCW7 530 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 KCNJ4P48050 445 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 VEGFBP49765 207 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 CHRNDQ07001 517 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 CCDC57Q2TAC2 916 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 EPHA10Q5JZY3 1008 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 CST9Q5W186 159 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 RSBN1LQ6PCB5 846 aaPredicted RBP26.22■■□□□ 1.79
CLN3-219ENST00000565778 USP17L1Q7RTZ2 530 aa26.22■■□□□ 1.79
CLN3-219ENST00000565778 ZNF804BA4D1E1 1349 aa26.21■■□□□ 1.79
CLN3-219ENST00000565778 HSPA1AP0DMV8 641 aaKnown RBP26.21■■□□□ 1.79
CLN3-219ENST00000565778 HSPA1BP0DMV9 641 aaKnown RBP26.21■■□□□ 1.79
CLN3-219ENST00000565778 TAF7LQ5H9L4 462 aa26.21■■□□□ 1.79
CLN3-219ENST00000565778 MED23Q9ULK4 1368 aa26.2■■□□□ 1.79
CLN3-219ENST00000565778 PTPRCP08575 1304 aa26.2■■□□□ 1.79
CLN3-219ENST00000565778 EGFRP00533 1210 aa26.2■■□□□ 1.78
CLN3-219ENST00000565778 USP48Q86UV5 1035 aa26.2■■□□□ 1.78
CLN3-219ENST00000565778 TRMT2AQ8IZ69 625 aaKnown RBP26.2■■□□□ 1.78
CLN3-219ENST00000565778 AGBL3Q8NEM8 1001 aa26.2■■□□□ 1.78
CLN3-219ENST00000565778 COA1Q9GZY4 146 aa26.2■■□□□ 1.78
CLN3-219ENST00000565778 RASSF10A6NK89 507 aa26.19■■□□□ 1.78
CLN3-219ENST00000565778 TXNRD3Q86VQ6 643 aa26.19■■□□□ 1.78
CLN3-219ENST00000565778 HELBQ8NG08 1087 aaPredicted RBP26.19■■□□□ 1.78
CLN3-219ENST00000565778 FBXW7Q969H0 707 aa26.19■■□□□ 1.78
CLN3-219ENST00000565778 CELF2O95319 508 aaKnown RBP26.18■■□□□ 1.78
CLN3-219ENST00000565778 KIF4BQ2VIQ3 1234 aa26.18■■□□□ 1.78
CLN3-219ENST00000565778 ALDH1L2Q3SY69 923 aa26.18■■□□□ 1.78
CLN3-219ENST00000565778 LDHAL6AQ6ZMR3 332 aa26.18■■□□□ 1.78
CLN3-219ENST00000565778 DCPSQ96C86 337 aaKnown RBP26.18■■□□□ 1.78
CLN3-219ENST00000565778 ZNF408Q9H9D4 720 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms