RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 LCE1DQ5T752 114 aa8.42□□□□□ -1.06
CHD9-215ENST00000565442 UBL7Q96S82 380 aaPredicted RBP8.42□□□□□ -1.06
CHD9-215ENST00000565442 DHX15O43143 795 aaKnown RBP8.41□□□□□ -1.06
CHD9-215ENST00000565442 CFAP70Q5T0N1 1121 aa8.41□□□□□ -1.06
CHD9-215ENST00000565442 ZDHHC13Q8IUH4 622 aa8.41□□□□□ -1.06
CHD9-215ENST00000565442 NSUN5Q96P11 429 aaKnown RBP8.41□□□□□ -1.06
CHD9-215ENST00000565442 RBSNQ9H1K0 784 aa8.41□□□□□ -1.06
CHD9-215ENST00000565442 TFIP11Q9UBB9 837 aaKnown RBP8.41□□□□□ -1.06
CHD9-215ENST00000565442 USP20Q9Y2K6 914 aa8.41□□□□□ -1.06
CHD9-215ENST00000565442 RTCBQ9Y3I0 505 aaKnown RBP8.41□□□□□ -1.06
CHD9-215ENST00000565442 ADAMTS4O75173 837 aa8.4□□□□□ -1.06
CHD9-215ENST00000565442 XYLBO75191 536 aa8.4□□□□□ -1.06
CHD9-215ENST00000565442 SPINK2P20155 84 aa8.4□□□□□ -1.06
CHD9-215ENST00000565442 GRIK1P39086 918 aa8.4□□□□□ -1.06
CHD9-215ENST00000565442 C11orf91Q3C1V1 193 aa8.4□□□□□ -1.06
CHD9-215ENST00000565442 INTS5Q6P9B9 1019 aaKnown RBP8.4□□□□□ -1.06
CHD9-215ENST00000565442 LARP1Q6PKG0 1096 aaKnown RBP8.4□□□□□ -1.06
CHD9-215ENST00000565442 KRTAP4-7Q9BYR0 210 aa8.4□□□□□ -1.06
CHD9-215ENST00000565442 OPLAHO14841 1288 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 MMP20O60882 483 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 HOXD8P13378 290 aaPredicted RBP8.39□□□□□ -1.07
CHD9-215ENST00000565442 LMOD1P29536 600 aaPredicted RBP8.39□□□□□ -1.07
CHD9-215ENST00000565442 SOX18P35713 384 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 NFIAQ12857 509 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 DPYDQ12882 1025 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 ARMC10Q8N2F6 343 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 MYO19Q96H55 970 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 MUC3BQ9H195 1237 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 TRIM33Q9UPN9 1127 aa8.39□□□□□ -1.07
CHD9-215ENST00000565442 MAFBQ9Y5Q3 323 aaPredicted RBP8.39□□□□□ -1.07
CHD9-215ENST00000565442 ARID1BQ8NFD5 2236 aaPredicted RBP8.38□□□□□ -1.07
CHD9-215ENST00000565442 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.38□□□□□ -1.07
CHD9-215ENST00000565442 CRTC2Q53ET0 693 aaPredicted RBP8.38□□□□□ -1.07
CHD9-215ENST00000565442 CACTIN-AS1Q8N1I8 211 aa8.38□□□□□ -1.07
CHD9-215ENST00000565442 CEP41Q9BYV8 373 aa8.38□□□□□ -1.07
CHD9-215ENST00000565442 FOXO3O43524 673 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 WISP1O95388 367 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 PTK7Q13308 1070 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 FZD5Q13467 585 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 UVSSAQ2YD98 709 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 RGL4Q8IZJ4 473 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 CMTR1Q8N1G2 835 aaKnown RBP8.37□□□□□ -1.07
CHD9-215ENST00000565442 GALNT11Q8NCW6 608 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 PPME1Q9Y570 386 aa8.37□□□□□ -1.07
CHD9-215ENST00000565442 DTX1Q86Y01 620 aa8.36□□□□□ -1.07
CHD9-215ENST00000565442 UTP4Q969X6 686 aaKnown RBP8.36□□□□□ -1.07
CHD9-215ENST00000565442 VTI1AQ96AJ9 217 aa8.36□□□□□ -1.07
CHD9-215ENST00000565442 C7orf69Q9H7B7 122 aa8.36□□□□□ -1.07
CHD9-215ENST00000565442 CDCA8Q53HL2 280 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 ACAD11Q709F0 780 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 TREML1Q86YW5 311 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 TRIM42Q8IWZ5 723 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 PBXIP1Q96AQ6 731 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 DBNDD2Q9BQY9 259 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 KCNMB2Q9Y691 235 aa8.35□□□□□ -1.07
CHD9-215ENST00000565442 PRR19A6NJB7 356 aa8.34□□□□□ -1.07
CHD9-215ENST00000565442 PPP1R15AO75807 674 aaPredicted RBP8.34□□□□□ -1.07
CHD9-215ENST00000565442 WEE1P30291 646 aa8.34□□□□□ -1.07
CHD9-215ENST00000565442 RNF43Q68DV7 783 aa8.34□□□□□ -1.07
CHD9-215ENST00000565442 ANKMY2Q8IV38 441 aa8.34□□□□□ -1.07
CHD9-215ENST00000565442 LRFN2Q9ULH4 789 aa8.34□□□□□ -1.07
CHD9-215ENST00000565442 ACIN1Q9UKV3 1341 aaKnown RBP8.33□□□□□ -1.08
CHD9-215ENST00000565442 HMX2A2RU54 273 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L15C9J2P7 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L10C9JJH3 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L13C9JLJ4 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L12C9JPN9 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L11C9JVI0 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L21D6R901 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L18D6R9N7 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L22D6RA61 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L17D6RBQ6 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L19D6RCP7 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L20D6RJB6 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 LINC01387J3KSC0 135 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 WNT11O96014 354 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
CHD9-215ENST00000565442 USP17L24Q0WX57 530 aa8.33□□□□□ -1.08
CHD9-215ENST00000565442 FAM46AQ96IP4 442 aaKnown RBP8.33□□□□□ -1.08
CHD9-215ENST00000565442 FAM196BA6NMK8 535 aa8.32□□□□□ -1.08
CHD9-215ENST00000565442 SRPK2P78362 688 aaKnown RBP8.32□□□□□ -1.08
CHD9-215ENST00000565442 MYRFLQ96LU7 910 aa8.32□□□□□ -1.08
CHD9-215ENST00000565442 KCNK4Q9NYG8 393 aa8.32□□□□□ -1.08
CHD9-215ENST00000565442 KANK4Q5T7N3 995 aaPredicted RBP8.31□□□□□ -1.08
CHD9-215ENST00000565442 TXNDC11Q6PKC3 985 aa8.31□□□□□ -1.08
CHD9-215ENST00000565442 RETREG2Q8NC44 543 aa8.31□□□□□ -1.08
CHD9-215ENST00000565442 ADGRE2Q9UHX3 823 aa8.31□□□□□ -1.08
CHD9-215ENST00000565442 KIAA1211Q6ZU35 1233 aa8.3□□□□□ -1.08
CHD9-215ENST00000565442 NLRP13Q86W25 1043 aa8.3□□□□□ -1.08
CHD9-215ENST00000565442 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.3□□□□□ -1.08
CHD9-215ENST00000565442 TM4SF5O14894 197 aa8.29□□□□□ -1.08
CHD9-215ENST00000565442 SHKBP1Q8TBC3 707 aa8.29□□□□□ -1.08
CHD9-215ENST00000565442 LACRTQ9GZZ8 138 aa8.29□□□□□ -1.08
CHD9-215ENST00000565442 VRTNQ9H8Y1 702 aa8.29□□□□□ -1.08
CHD9-215ENST00000565442 PDIA4P13667 645 aaKnown RBP8.28□□□□□ -1.08
CHD9-215ENST00000565442 CDC27P30260 824 aa8.28□□□□□ -1.08
CHD9-215ENST00000565442 ATP11AP98196 1134 aa8.28□□□□□ -1.08
CHD9-215ENST00000565442 TRIP4Q15650 581 aaPredicted RBP8.28□□□□□ -1.08
CHD9-215ENST00000565442 DUOXA2Q1HG44 320 aa8.28□□□□□ -1.08
CHD9-215ENST00000565442 CLEC10AQ8IUN9 316 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms